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author | lingnanyuan <1297162327@qq.com> | 2017-11-08 15:03:22 -0600 |
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committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-11-08 14:03:22 -0700 |
commit | bb619aa09132dbd970d2b78e23fecbd78ee774de (patch) | |
tree | 6dbbd6a6da44fc916e01c6b96f1a25e94836abda /var | |
parent | d8db861fec8d0ea0b38119db7df5671add609159 (diff) | |
download | spack-bb619aa09132dbd970d2b78e23fecbd78ee774de.tar.gz spack-bb619aa09132dbd970d2b78e23fecbd78ee774de.tar.bz2 spack-bb619aa09132dbd970d2b78e23fecbd78ee774de.tar.xz spack-bb619aa09132dbd970d2b78e23fecbd78ee774de.zip |
r-aneufinder: Create new package. (#6191)
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/r-aneufinder/package.py | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-aneufinder/package.py b/var/spack/repos/builtin/packages/r-aneufinder/package.py new file mode 100644 index 0000000000..6be07235a1 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-aneufinder/package.py @@ -0,0 +1,57 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAneufinder(RPackage): + """This package implements functions for CNV calling, plotting, + export and analysis from whole-genome single cell sequencing data.""" + + homepage = "https://www.bioconductor.org/packages/AneuFinder/" + url = "https://git.bioconductor.org/packages/AneuFinder" + + version('1.4.0', git='https://git.bioconductor.org/packages/AneuFinder', commit='e5bdf4d5e4f84ee5680986826ffed636ed853b8e') + + depends_on('r@3.4.0:3.4.9', when='@1.4.0') + depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-cowplot', type=('build', 'run')) + depends_on('r-aneufinderdata', type=('build', 'run')) + depends_on('r-foreach', type=('build', 'run')) + depends_on('r-doparallel', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-iranges', type=('build', 'run')) + depends_on('r-rsamtools', type=('build', 'run')) + depends_on('r-bamsignals', type=('build', 'run')) + depends_on('r-dnacopy', type=('build', 'run')) + depends_on('r-biostrings', type=('build', 'run')) + depends_on('r-genomicalignments', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-ggdendro', type=('build', 'run')) + depends_on('r-reordercluster', type=('build', 'run')) + depends_on('r-mclust', type=('build', 'run')) + depends_on('r-ggrepel', type=('build', 'run')) |