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| author | Sinan <sbulutw@gmail.com> | 2018-05-23 05:25:42 -0700 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-05-23 07:25:42 -0500 |
| commit | bc73e85af8fe4d3e4fef13fa3a1d7031a5cd9cd4 (patch) | |
| tree | c44a2d6f61d63c32feea725d1ce36c99715814a7 /var | |
| parent | 3712ac1f663a0c06765daced44f6a4e2f986c9f4 (diff) | |
| download | spack-bc73e85af8fe4d3e4fef13fa3a1d7031a5cd9cd4.tar.gz spack-bc73e85af8fe4d3e4fef13fa3a1d7031a5cd9cd4.tar.bz2 spack-bc73e85af8fe4d3e4fef13fa3a1d7031a5cd9cd4.tar.xz spack-bc73e85af8fe4d3e4fef13fa3a1d7031a5cd9cd4.zip | |
Package/mirdeep/fix for new url take2 (#8247)
* rename: mirdeep -> mirdeep2
* fixes for new url
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/mirdeep2/package.py (renamed from var/spack/repos/builtin/packages/mirdeep/package.py) | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/var/spack/repos/builtin/packages/mirdeep/package.py b/var/spack/repos/builtin/packages/mirdeep2/package.py index 60f5aaaac9..02218c4da4 100644 --- a/var/spack/repos/builtin/packages/mirdeep/package.py +++ b/var/spack/repos/builtin/packages/mirdeep2/package.py @@ -26,14 +26,14 @@ from spack import * import glob -class Mirdeep(Package): +class Mirdeep2(Package): """miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs.""" homepage = "https://www.mdc-berlin.de/8551903/en/" - url = "https://www.mdc-berlin.de/45995549/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep2_0_0_8.zip" + url = "https://www.mdc-berlin.de/system/files/migrated_files/fiona/mirdeep2_0_0_8.zip" - version('2.0.0.8', 'a707f7d7ad4a2975fb8b2e78c5bcf483') + version('0.0.8', 'a707f7d7ad4a2975fb8b2e78c5bcf483') depends_on('perl', type=('build', 'run')) depends_on('perl-pdf-api2', type=('build', 'run')) @@ -43,7 +43,7 @@ class Mirdeep(Package): depends_on('randfold') def url_for_version(self, version): - url = 'https://www.mdc-berlin.de/45995549/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep{0}.zip' + url = 'https://www.mdc-berlin.de/system/files/migrated_files/fiona/mirdeep2_{0}.zip' return url.format(version.underscored) def patch(self): |