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| author | Luke Diorio-Toth <led2386@gmail.com> | 2022-06-23 17:58:45 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-06-23 22:58:45 +0000 |
| commit | 158f6ddb1454b29f03955ee6572be1a1c59880a4 (patch) | |
| tree | 2db2492fc2d4666c7e19d6cb7b32e49b05e51daa /var | |
| parent | 86d1a6f2fc65d53b7ddf6590c86056ef6dc77aeb (diff) | |
| download | spack-158f6ddb1454b29f03955ee6572be1a1c59880a4.tar.gz spack-158f6ddb1454b29f03955ee6572be1a1c59880a4.tar.bz2 spack-158f6ddb1454b29f03955ee6572be1a1c59880a4.tar.xz spack-158f6ddb1454b29f03955ee6572be1a1c59880a4.zip | |
py-instrain: adding new package (#31244)
* py-instrain: adding new package
* py-instrain: fixed style
* removed unnecessary setuptools and numba version restrictions
* fixed pandas version
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-instrain/package.py | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-instrain/package.py b/var/spack/repos/builtin/packages/py-instrain/package.py new file mode 100644 index 0000000000..cb8ad14e1e --- /dev/null +++ b/var/spack/repos/builtin/packages/py-instrain/package.py @@ -0,0 +1,37 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class PyInstrain(PythonPackage): + """inStrain is python program for analysis of co-occurring genome + populations from metagenomes that allows highly accurate genome + comparisons, analysis of coverage, microdiversity, and linkage, and + sensitive SNP detection with gene localization and synonymous + non-synonymous identification.""" + + homepage = "https://github.com/MrOlm/instrain" + pypi = "inStrain/inStrain-1.5.7.tar.gz" + + version('1.5.7', sha256='c5dcb01dae244927fe987b5f0695d895ccf521c9dfd87a2cb59057ad50bd9bfa') + + depends_on('python@3.4.0:', type=('build', 'run')) + depends_on('py-setuptools', type=('build')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-pandas@0.25:1.1.2,1.1.4:', type=('build', 'run')) + depends_on('py-seaborn', type=('build', 'run')) + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('py-biopython@:1.74', type=('build', 'run')) + depends_on('py-scikit-learn', type=('build', 'run')) + depends_on('py-pytest', type=('build')) + depends_on('py-tqdm', type=('build', 'run')) + depends_on('py-pysam@0.15:', type=('build', 'run')) + depends_on('py-networkx', type=('build', 'run')) + depends_on('py-h5py', type=('build', 'run')) + depends_on('py-psutil', type=('build', 'run')) + depends_on('py-lmfit', type=('build', 'run')) + depends_on('py-numba', type=('build', 'run')) |