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author | liuyangzhuan <liuyangzhuan@gmail.com> | 2022-06-13 08:48:55 -0700 |
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committer | GitHub <noreply@github.com> | 2022-06-13 08:48:55 -0700 |
commit | 2ca32fbc8cafe23a6017c1cb5c3b54725dda06ff (patch) | |
tree | 6912ba6b62fc4edff6c9af8f37c3025311fea571 /var | |
parent | e50d08ce48b5938a292d6b2c85801c8e42759492 (diff) | |
download | spack-2ca32fbc8cafe23a6017c1cb5c3b54725dda06ff.tar.gz spack-2ca32fbc8cafe23a6017c1cb5c3b54725dda06ff.tar.bz2 spack-2ca32fbc8cafe23a6017c1cb5c3b54725dda06ff.tar.xz spack-2ca32fbc8cafe23a6017c1cb5c3b54725dda06ff.zip |
Remove filter operation for superlu-dist to avoid permission issues on read-only systems (#30970)
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize
* adding gptune package
* minor fix for macos spack test
* update patch for py-scikit-optimize; update test files for gptune
* fixing gptune package style error
* fixing unit tests
* a few changes reviewed in the PR
* improved gptune package.py with a few newly added/improved dependencies
* fixed a few style errors
* minor fix on package name py-pyro4
* fixing more style errors
* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* resolved a few issues in the PR
* fixing file permissions
* a few minor changes
* style correction
* minor correction to jq package file
* Update var/spack/repos/builtin/packages/py-pyro4/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fixing a few issues in the PR
* adding py-selectors34 required by py-pyro4
* improved the superlu-dist package
* improved the superlu-dist package
* moree changes to gptune and py-selectors34 based on the PR
* Update var/spack/repos/builtin/packages/py-selectors34/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi
* fixing style issue of gptune
* changing file mode
* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant
* fixing style error
* corrected pddrive_spawn path in gptune test; enforcing gcc>7
* fixing style error
* setting environment variables when loading gptune
* removing debug print in hypre/package.py
* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR
* changing site_packages_dir to python_platlib
* not using python3.9 for py-gpy, which causes due to dropped support of tp_print
* more replacement of site_packages_dir
* fixing a few dependencies in gptune; added a gptune version
* adding url for gptune
* minor correction of gptune
* updating versions in butterflypack
* added a version for openturns
* added a url for openturns
* minor fix for openturns
* Update var/spack/repos/builtin/packages/openturns/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* added version2.1.1 for butterflypack
* fixing a tag in butterflypack
* minor fix for superlu-dist
* removed file filter for superlu-dist
* Update var/spack/repos/builtin/packages/superlu-dist/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* superlu-dist: add version detection for the testing; removing unused lines
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/superlu-dist/package.py | 46 |
1 files changed, 10 insertions, 36 deletions
diff --git a/var/spack/repos/builtin/packages/superlu-dist/package.py b/var/spack/repos/builtin/packages/superlu-dist/package.py index 34dbcb1322..28aff2ffdf 100644 --- a/var/spack/repos/builtin/packages/superlu-dist/package.py +++ b/var/spack/repos/builtin/packages/superlu-dist/package.py @@ -129,51 +129,25 @@ class SuperluDist(CMakePackage, CudaPackage, ROCmPackage): return (None, None, flags) examples_src_dir = 'EXAMPLE' - mk_hdr = 'make.inc' - mk_hdr_in = mk_hdr + '.in' @run_after('install') def cache_test_sources(self): - """Copy the example source files after the package is installed to an + """Copy the example matrices after the package is installed to an install test subdirectory for use during `spack test run`.""" - self.cache_extra_test_sources([self.examples_src_dir, self.mk_hdr]) + self.cache_extra_test_sources([self.examples_src_dir]) def test(self): - mk_file = join_path(self.install_test_root, self.mk_hdr) - # Replace 'SRC' with 'lib' in the library's path - filter_file(r'^(DSUPERLULIB.+)SRC(.+)', '\\1lib\\2', mk_file) - # Set library flags for all libraries superlu-dist depends on - filter_file(r'^LIBS.+\+=.+', '', mk_file) - filter_file(r'^LIBS[^\+]+=.+', 'LIBS = $(DSUPERLULIB)' + - ' {0}'.format(self.spec['blas'].libs.ld_flags) + - ' {0}'.format(self.spec['lapack'].libs.ld_flags) + - ' {0}'.format(self.spec['parmetis'].libs.ld_flags) + - ' {0}'.format(self.spec['metis'].libs.ld_flags) + - ' $(CUDALIBS)', - mk_file) - cuda_lib_opts = '' - if '+cuda' in self.spec: - cuda_lib_opts = ',-rpath,{0}'.format( - self.spec['cuda'].libs.directories[0]) - # Set the rpath for all the libs - filter_file(r'^LOADOPTS.+', 'LOADOPTS = -Wl' + - ',-rpath,{0}'.format(self.prefix.lib) + - ',-rpath,{0}'.format(self.spec['blas'].prefix.lib) + - ',-rpath,{0}'.format(self.spec['lapack'].prefix.lib) + - ',-rpath,{0}'.format(self.spec['parmetis'].prefix.lib) + - ',-rpath,{0}'.format(self.spec['metis'].prefix.lib) + - cuda_lib_opts, - mk_file) - test_dir = join_path(self.install_test_root, self.examples_src_dir) - test_exe = 'pddrive' + superludriver = join_path(self.prefix.lib, 'EXAMPLE', 'pddrive') with working_dir(test_dir, create=False): - make(test_exe) # Smoke test input parameters: -r 2 -c 2 g20.rua - test_args = ['-n', '4', test_exe, '-r', '2', '-c', '2', 'g20.rua'] + test_args = ['-n', '4', superludriver, '-r', '2', '-c', '2', 'g20.rua'] # Find the correct mpirun command mpiexe_f = which('srun', 'mpirun', 'mpiexec') if mpiexe_f: - self.run_test(mpiexe_f.command, test_args, work_dir='.', - purpose='superlu-dist smoke test') - make('clean') + if self.spec.satisfies('@7.2.0:'): + self.run_test(mpiexe_f.command, test_args, work_dir='.', + purpose='superlu-dist smoke test') + else: + self.run_test('echo', options=['skip test'], work_dir='.', + purpose='superlu-dist smoke test') |