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authorJustin S <3630356+codeandkey@users.noreply.github.com>2020-04-14 11:13:16 -0500
committerGitHub <noreply@github.com>2020-04-14 11:13:16 -0500
commit71fb29fccf083f70254524f346cac7675ba60f48 (patch)
treea55ab7a260058e2db6f11a34c2d3a51cda6f150b /var
parent5acea35e82f894a45615a5b02378bdef6ef6f345 (diff)
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muscle: add 3.8.31 (#15974)
* muscle: add 3.8.31 * muscle: use build_directory property * muscle: add url_for_version, fix version comparison
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/muscle/package.py27
1 files changed, 24 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/muscle/package.py b/var/spack/repos/builtin/packages/muscle/package.py
index 4e62064362..0f5d5f5097 100644
--- a/var/spack/repos/builtin/packages/muscle/package.py
+++ b/var/spack/repos/builtin/packages/muscle/package.py
@@ -12,15 +12,36 @@ class Muscle(MakefilePackage):
that are consistently better than CLUSTALW."""
homepage = "http://drive5.com/muscle/"
- url = "http://www.drive5.com/muscle/muscle_src_3.8.1551.tar.gz"
+ version('3.8.31', sha256='43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad')
version('3.8.1551', sha256='c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e')
+ @property
+ def build_directory(self):
+ if self.spec.satisfies('@3.8.31'):
+ return 'src'
+ else:
+ return '.'
+
+ def url_for_version(self, version):
+ fmt_new = 'https://drive5.com/muscle/downloads{0}/muscle{0}_src.tar.gz'
+ fmt_old = 'https://drive5.com/muscle/muscle_src_{0}.tar.gz'
+
+ if version == Version('3.8.31'):
+ return fmt_new.format(version.dotted)
+ else:
+ return fmt_old.format(version.dotted)
+
def edit(self, spec, prefix):
- makefile = FileFilter('Makefile')
+ mkfile_name = 'Makefile'
+
+ if self.spec.satisfies('@3.8.31'):
+ mkfile_name = 'mk'
+
+ makefile = FileFilter(join_path(self.build_directory, mkfile_name))
makefile.filter('-static', '')
makefile.filter('-funroll-loops', '')
def install(self, spec, prefix):
mkdirp(prefix.bin)
- install('muscle', prefix.bin)
+ install(join_path(self.build_directory, 'muscle'), prefix.bin)