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author | Yifan Zhu <ifanzhu@foxmail.com> | 2018-04-12 14:51:51 -0500 |
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committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-04-12 14:51:51 -0500 |
commit | 7d8e6b2edacc5c973c867fef4db7a319c94ba11d (patch) | |
tree | 735548305cbbff8d82245379def6805e8c74ccef /var | |
parent | f5e4befcacbb73f93538bcea4eb308488082fed1 (diff) | |
download | spack-7d8e6b2edacc5c973c867fef4db7a319c94ba11d.tar.gz spack-7d8e6b2edacc5c973c867fef4db7a319c94ba11d.tar.bz2 spack-7d8e6b2edacc5c973c867fef4db7a319c94ba11d.tar.xz spack-7d8e6b2edacc5c973c867fef4db7a319c94ba11d.zip |
New package r-tmixclust (#7658)
* r-tmixclust: new package
* r-cluster: hash changed
* r-cluster: removed 2.0.6 and added the latest 2.0.7-1
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/r-cluster/package.py | 2 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/r-tmixclust/package.py | 49 |
2 files changed, 50 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/r-cluster/package.py b/var/spack/repos/builtin/packages/r-cluster/package.py index 64fec7b0dd..5a7e222a14 100644 --- a/var/spack/repos/builtin/packages/r-cluster/package.py +++ b/var/spack/repos/builtin/packages/r-cluster/package.py @@ -34,6 +34,6 @@ class RCluster(RPackage): url = "https://cran.rstudio.com/src/contrib/cluster_2.0.6.tar.gz" list_url = "https://cran.r-project.org/src/contrib/Archive/cluster" - version('2.0.6', 'e7d0660b05c65f4d886ebf7f046939ab') + version('2.0.7-1', 'a37add21b91d3e4f3883d005331e0d45') version('2.0.5', '7330f209ebce960bdee1a6d6679cb85a') version('2.0.4', 'bb4deceaafb1c42bb1278d5d0dc11e59') diff --git a/var/spack/repos/builtin/packages/r-tmixclust/package.py b/var/spack/repos/builtin/packages/r-tmixclust/package.py new file mode 100644 index 0000000000..d36787c8b9 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-tmixclust/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RTmixclust(RPackage): + """Implementation of a clustering method for time series gene expression + data based on mixed-effects models with Gaussian variables and + non-parametric cubic splines estimation. The method can robustly account + for the high levels of noise present in typical gene expression time + series datasets.""" + + homepage = "https://bioconductor.org/packages/TMixClust/" + url = "https://git.bioconductor.org/packages/TMixClust" + + version('1.0.1', git='https://git.bioconductor.org/packages/TMixClust', + commit='0ac800210e3eb9da911767a80fb5582ab33c0cad') + + depends_on('r-gss', type=('build', 'run')) + depends_on('r-mvtnorm', type=('build', 'run')) + depends_on('r-zoo', type=('build', 'run')) + depends_on('r-cluster', type=('build', 'run')) + depends_on('r-biocparallel', type=('build', 'run')) + depends_on('r-flexclust', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-spem', type=('build', 'run')) + depends_on('r@3.4.3:3.4.9', when='@1.0.1') |