Merge branch 'features/newarch' into develop

Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py

18 files changed, 345 insertions, 34 deletions

diff --git a/var/spack/mock_configs/site_spackconfig/compilers.yaml b/var/spack/mock_configs/site_spackconfig/compilers.yaml
new file mode 100644
index 0000000000..5f8b38007b
--- /dev/null
+++ b/var/spack/mock_configs/site_spackconfig/compilers.yaml
@@ -0,0 +1,40 @@
+compilers:
+  all:
+    clang@3.3:
+      cc: /path/to/clang
+      cxx: /path/to/clang++
+      f77: None
+      fc: None
+      modules: None
+      strategy: PATH
+    gcc@4.5.0:
+      cc: /path/to/gcc
+      cxx: /path/to/g++
+      f77: /path/to/gfortran
+      fc: /path/to/gfortran
+      modules: None
+      strategy: PATH
+    gcc@5.2.0:
+      cc: cc
+      cxx: CC
+      f77: ftn
+      fc: ftn
+      modules:
+        - PrgEnv-gnu
+        - gcc/5.2.0
+      strategy: MODULES
+    intel@15.0.1:
+      cc: cc
+      ccx: CC
+      f77: ftn
+      fc: ftn
+      modules:
+      - PrgEnv-intel
+      - intel/15.0.1
+      strategy: MODULES
+    intel@15.1.2:
+      cc: /path/to/icc
+      cxx: /path/to/ic++
+      f77: /path/to/ifort
+      fc: /path/to/ifort
+      strategy: PATH
\ No newline at end of file
diff --git a/var/spack/packages/adios/package.py b/var/spack/packages/adios/package.py
new file mode 100644
index 0000000000..260dcbe851
--- /dev/null
+++ b/var/spack/packages/adios/package.py
@@ -0,0 +1,38 @@
+import os
+
+from spack import *
+class Adios(Package):
+    """The Adaptable IO System (ADIOS) provides a simple, 
+        flexible way for scientists to describe the 
+        data in their code that may need to be written, 
+        read, or processed outside of the running simulation
+    """
+    
+    homepage = "http://www.olcf.ornl.gov/center-projects/adios/"
+    url      = "http://users.nccs.gov/~pnorbert/adios-1.9.0.tar.gz"
+
+    version('1.9.0', 'dbf5cb10e32add2f04c9b4052b7ffa76')
+
+    # Lots of setting up here for this package
+    # module swap PrgEnv-intel PrgEnv-$COMP
+    # module load cray-netcdf/4.3.3.1
+    # module load cray-hdf5/1.8.14
+    # module load python/2.7.10
+    depends_on('hdf5')
+    depends_on('mxml')
+
+    def install(self, spec, prefix):
+        configure_args = ["--prefix=%s" % prefix, 
+                          "--with-mxml=%s" % spec['mxml'].prefix, 
+                          "--with-hdf5=%s" % spec['hdf5'].prefix,
+                          "--with-netcdf=%s" % os.environ["NETCDF_DIR"],
+                          "--with-infiniband=no",
+                          "MPICC=cc","MPICXX=CC","MPIFC=ftn",
+                          "CPPFLAGS=-DMPICH_IGNORE_CXX_SEEK"] 
+
+        if spec.satisfies('%gcc'):
+            configure_args.extend(["CC=gcc", "CXX=g++", "FC=gfortran"])
+
+        configure(*configure_args)
+        make()
+        make("install")
diff --git a/var/spack/packages/mxml/package.py b/var/spack/packages/mxml/package.py
new file mode 100644
index 0000000000..f79251d312
--- /dev/null
+++ b/var/spack/packages/mxml/package.py
@@ -0,0 +1,26 @@
+import os
+from spack import *
+
+class Mxml(Package):
+    """Mini-XML is a small XML library that you can use to read and write XML 
+       and XML-like data files in your application without requiring large 
+       non-standard libraries
+    """
+
+    homepage = "http://www.msweet.org"
+    url      = "http://www.msweet.org/files/project3/mxml-2.9.tar.gz"
+
+    version('2.9', 'e21cad0f7aacd18f942aa0568a8dee19')
+    version('2.8', 'd85ee6d30de053581242c4a86e79a5d2')
+    version('2.7', '76f2ae49bf0f5745d5cb5d9507774dc9')
+    version('2.6', '68977789ae64985dddbd1a1a1652642e')
+    version('2.5', 'f706377fba630b39fa02fd63642b17e5')
+
+    # module swap PrgEnv-intel PrgEnv-$COMP (Can use whatever compiler you want to use) 
+    # Case statement to change CC and CXX flags
+
+    def install(self, spec, prefix):
+        configure('--prefix=%s' % prefix, "--disable-shared", 'CFLAGS=-static')
+        make()
+        make("install")
+
diff --git a/var/spack/repos/builtin.mock/packages/externalmodule/package.py b/var/spack/repos/builtin.mock/packages/externalmodule/package.py
new file mode 100644
index 0000000000..f7b0da3fd9
--- /dev/null
+++ b/var/spack/repos/builtin.mock/packages/externalmodule/package.py
@@ -0,0 +1,37 @@
+
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+class Externalmodule(Package):
+    homepage = "http://somewhere.com"
+    url      = "http://somewhere.com/module-1.0.tar.gz"
+
+    version('1.0', '1234567890abcdef1234567890abcdef')
+
+    depends_on('externalprereq')
+
+    def install(self, spec, prefix):
+        pass
diff --git a/var/spack/repos/builtin.mock/packages/multimethod/package.py b/var/spack/repos/builtin.mock/packages/multimethod/package.py
index def73ad82e..649afa5945 100644
--- a/var/spack/repos/builtin.mock/packages/multimethod/package.py
+++ b/var/spack/repos/builtin.mock/packages/multimethod/package.py
@@ -22,8 +22,11 @@
 # License along with this program; if not, write to the Free Software
 # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
+import imp
+from llnl.util.filesystem import join_path
+from spack.util.naming import mod_to_class
 from spack import *
-
+import spack.architecture
 
 class Multimethod(Package):
     """This package is designed for use with Spack's multimethod test.
@@ -101,25 +104,26 @@ class Multimethod(Package):
 
 
     #
-    # Make sure we can switch methods on different architectures
+    # Make sure we can switch methods on different target
     #
-    @when('arch=x86_64')
-    def different_by_architecture(self):
-        return 'x86_64'
-
-    @when('arch=ppc64')
-    def different_by_architecture(self):
-        return 'ppc64'
-
-    @when('arch=ppc32')
-    def different_by_architecture(self):
-        return 'ppc32'
-
-    @when('arch=arm64')
-    def different_by_architecture(self):
-        return 'arm64'
-
-
+#    for platform_name in ['cray_xc', 'darwin', 'linux']:
+#        file_path = join_path(spack.platform_path, platform_name)
+#        platform_mod = imp.load_source('spack.platforms', file_path + '.py')
+#        cls = getattr(platform_mod, mod_to_class(platform_name))
+        
+#        platform = cls()
+    platform = spack.architecture.sys_type()
+    targets = platform.targets.values()
+    if len(targets) > 1:
+        targets = targets[:-1]
+    
+    for target in targets:
+        @when('target='+target.name)
+        def different_by_target(self):
+            if isinstance(self.spec.architecture.target,basestring):
+                return self.spec.architecture.target
+            else:
+                return self.spec.architecture.target.name
     #
     # Make sure we can switch methods on different dependencies
     #
diff --git a/var/spack/repos/builtin/packages/binutils/package.py b/var/spack/repos/builtin/packages/binutils/package.py
index 9e4cc98ae6..5f305abb02 100644
--- a/var/spack/repos/builtin/packages/binutils/package.py
+++ b/var/spack/repos/builtin/packages/binutils/package.py
@@ -30,8 +30,9 @@ class Binutils(Package):
 
     url="https://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2"
 
+    # 2.26 is incompatible with py-pillow build for some reason.
     version('2.26', '64146a0faa3b411ba774f47d41de239f')
-    version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66')
+    version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66', preferred=True)
     version('2.24', 'e0f71a7b2ddab0f8612336ac81d9636b')
     version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e')
     version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764')
diff --git a/var/spack/repos/builtin/packages/boost/package.py b/var/spack/repos/builtin/packages/boost/package.py
index 8a49672824..cde76c590a 100644
--- a/var/spack/repos/builtin/packages/boost/package.py
+++ b/var/spack/repos/builtin/packages/boost/package.py
@@ -132,7 +132,7 @@ class Boost(Package):
                "/boost/%s/boost_%s.tar.bz2" % (dots, underscores)
 
     def determine_toolset(self, spec):
-        if spec.satisfies("arch=darwin-x86_64"):
+        if spec.satisfies("platform=darwin"):
             return 'darwin'
 
         toolsets = {'g++': 'gcc',
diff --git a/var/spack/repos/builtin/packages/espresso/package.py b/var/spack/repos/builtin/packages/espresso/package.py
index ef6a3ccc7b..63a5560137 100644
--- a/var/spack/repos/builtin/packages/espresso/package.py
+++ b/var/spack/repos/builtin/packages/espresso/package.py
@@ -87,7 +87,7 @@ class Espresso(Package):
         configure(*options)
         make('all')
 
-        if spec.architecture.startswith('darwin'):
+        if spec.satisfies('platform=darwin'):
             mkdirp(prefix.bin)
             for filename in glob("bin/*.x"):
                 install(filename, prefix.bin)
diff --git a/var/spack/repos/builtin/packages/libpciaccess/package.py b/var/spack/repos/builtin/packages/libpciaccess/package.py
index 42e8711a7d..91cef95cec 100644
--- a/var/spack/repos/builtin/packages/libpciaccess/package.py
+++ b/var/spack/repos/builtin/packages/libpciaccess/package.py
@@ -37,7 +37,7 @@ class Libpciaccess(Package):
 
     def install(self, spec, prefix):
         # libpciaccess does not support OS X
-        if spec.satisfies('arch=darwin-x86_64'):
+        if spec.satisfies('platform=darwin'):
             # create a dummy directory
             mkdir(prefix.lib)
             return
diff --git a/var/spack/repos/builtin/packages/libpthread-stubs/package.py b/var/spack/repos/builtin/packages/libpthread-stubs/package.py
new file mode 100644
index 0000000000..4bcca43c24
--- /dev/null
+++ b/var/spack/repos/builtin/packages/libpthread-stubs/package.py
@@ -0,0 +1,39 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+class LibpthreadStubs(Package):
+    """The libpthread-stubs package provides weak aliases for pthread
+       functions not provided in libc or otherwise available by
+       default. """
+    homepage = "http://xcb.freedesktop.org/"
+    url      = "http://xcb.freedesktop.org/dist/libpthread-stubs-0.1.tar.bz2"
+
+    version('0.3', 'e8fa31b42e13f87e8f5a7a2b731db7ee')
+
+    def install(self, spec, prefix):
+        configure('--prefix=%s' % prefix)
+        make()
+        make("install")
diff --git a/var/spack/repos/builtin/packages/libxau/package.py b/var/spack/repos/builtin/packages/libxau/package.py
new file mode 100644
index 0000000000..55816ecdbd
--- /dev/null
+++ b/var/spack/repos/builtin/packages/libxau/package.py
@@ -0,0 +1,44 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+class Libxau(Package):
+    """The libXau package contains a library implementing the X11
+       Authorization Protocol. This is useful for restricting client
+       access to the display."""
+    homepage = "http://xcb.freedesktop.org/"
+    url      = "http://ftp.x.org/pub/individual/lib/libXau-1.0.8.tar.bz2"
+
+    version('1.0.8', '685f8abbffa6d145c0f930f00703b21b')
+
+    depends_on('xproto')
+
+    def install(self, spec, prefix):
+        # FIXME: Modify the configure line to suit your build system here.
+        configure('--prefix=%s' % prefix)
+
+        # FIXME: Add logic to build and install here
+        make()
+        make("install")
diff --git a/var/spack/repos/builtin/packages/libxcb/package.py b/var/spack/repos/builtin/packages/libxcb/package.py
index 0f39bb0f1d..746d4567e2 100644
--- a/var/spack/repos/builtin/packages/libxcb/package.py
+++ b/var/spack/repos/builtin/packages/libxcb/package.py
@@ -35,18 +35,19 @@ class Libxcb(Package):
 
     version('1.11', '1698dd837d7e6e94d029dbe8b3a82deb')
     version('1.11.1', '118623c15a96b08622603a71d8789bf3')
+
     depends_on("python")
     depends_on("xcb-proto")
     depends_on("pkg-config")
-
-    # depends_on('pthread')    # Ubuntu: apt-get install libpthread-stubs0-dev
-    # depends_on('xau')        # Ubuntu: apt-get install libxau-dev
+    depends_on("libpthread-stubs")
+    depends_on('libxau')
 
     def patch(self):
         filter_file('typedef struct xcb_auth_info_t {', 'typedef struct {', 'src/xcb.h')
 
 
     def install(self, spec, prefix):
+        env['PKG_CONFIG_PATH'] = env['PKG_CONFIG_PATH'] + ':/usr/lib64/pkgconfig'
         configure("--prefix=%s" % prefix)
 
         make()
diff --git a/var/spack/repos/builtin/packages/llvm/package.py b/var/spack/repos/builtin/packages/llvm/package.py
index c32f66590a..7a6ea7401c 100644
--- a/var/spack/repos/builtin/packages/llvm/package.py
+++ b/var/spack/repos/builtin/packages/llvm/package.py
@@ -267,16 +267,16 @@ class Llvm(Package):
 
         if '+all_targets' not in spec: # all is default on cmake
             targets = ['CppBackend', 'NVPTX', 'AMDGPU']
-            if 'x86' in spec.architecture.lower():
+            if 'x86' in spec.architecture.target.lower():
                 targets.append('X86')
-            elif 'arm' in spec.architecture.lower():
+            elif 'arm' in spec.architecture.target.lower():
                 targets.append('ARM')
-            elif 'aarch64' in spec.architecture.lower():
+            elif 'aarch64' in spec.architecture.target.lower():
                 targets.append('AArch64')
-            elif 'sparc' in spec.architecture.lower():
+            elif 'sparc' in spec.architecture.target.lower():
                 targets.append('sparc')
-            elif ('ppc' in spec.architecture.lower() or
-                  'power' in spec.architecture.lower()):
+            elif ('ppc' in spec.architecture.target.lower() or
+                  'power' in spec.architecture.target.lower()):
                 targets.append('PowerPC')
 
             cmake_args.append('-DLLVM_TARGETS_TO_BUILD:Bool=' + ';'.join(targets))
diff --git a/var/spack/repos/builtin/packages/lua/package.py b/var/spack/repos/builtin/packages/lua/package.py
index 8ce4a7b94d..761932361b 100644
--- a/var/spack/repos/builtin/packages/lua/package.py
+++ b/var/spack/repos/builtin/packages/lua/package.py
@@ -57,7 +57,7 @@ class Lua(Package):
         placement='luarocks')
 
     def install(self, spec, prefix):
-        if spec.satisfies("arch=darwin-i686") or spec.satisfies("arch=darwin-x86_64"):  # NOQA: ignore=E501
+        if spec.satisfies("platform=darwin"):
             target = 'macosx'
         else:
             target = 'linux'
diff --git a/var/spack/repos/builtin/packages/openssl/package.py b/var/spack/repos/builtin/packages/openssl/package.py
index 34ab0703ad..377bffe723 100644
--- a/var/spack/repos/builtin/packages/openssl/package.py
+++ b/var/spack/repos/builtin/packages/openssl/package.py
@@ -100,7 +100,7 @@ class Openssl(Package):
         # in the environment, then this will override what is set in the
         # Makefile, leading to build errors.
         env.pop('APPS', None)
-        if spec.satisfies("arch=darwin-x86_64") or spec.satisfies("arch=ppc64"):
+        if spec.satisfies("target=x86_64") or spec.satisfies("target=ppc64"):
             # This needs to be done for all 64-bit architectures (except Linux,
             # where it happens automatically?)
             env['KERNEL_BITS'] = '64'
diff --git a/var/spack/repos/builtin/packages/py-h5py/package.py b/var/spack/repos/builtin/packages/py-h5py/package.py
index de72bac44e..a8eb027ba5 100644
--- a/var/spack/repos/builtin/packages/py-h5py/package.py
+++ b/var/spack/repos/builtin/packages/py-h5py/package.py
@@ -37,6 +37,8 @@ class PyH5py(Package):
     depends_on('hdf5')
     depends_on('py-numpy')
     depends_on('py-cython')
+    depends_on('py-six')
+    depends_on('py-pkgconfig')
 
     def install(self, spec, prefix):
         python('setup.py', 'configure', '--hdf5=%s' % spec['hdf5'].prefix)
diff --git a/var/spack/repos/builtin/packages/xorg-util-macros/package.py b/var/spack/repos/builtin/packages/xorg-util-macros/package.py
new file mode 100644
index 0000000000..963d93442f
--- /dev/null
+++ b/var/spack/repos/builtin/packages/xorg-util-macros/package.py
@@ -0,0 +1,38 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+class XorgUtilMacros(Package):
+    """The util-macros package contains the m4 macros used by all of the Xorg packages."""
+
+    homepage = "http://www.example.com"
+    url      = "http://ftp.x.org/pub/individual/util/util-macros-1.19.0.tar.bz2"
+
+    version('1.19.0', '1cf984125e75f8204938d998a8b6c1e1')
+
+    def install(self, spec, prefix):
+        configure("--prefix=%s" % prefix)
+        make()
+        make("install")
diff --git a/var/spack/repos/builtin/packages/xproto/package.py b/var/spack/repos/builtin/packages/xproto/package.py
new file mode 100644
index 0000000000..7be6defb83
--- /dev/null
+++ b/var/spack/repos/builtin/packages/xproto/package.py
@@ -0,0 +1,41 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+class Xproto(Package):
+    """The Xorg protocol headers provide the header files required to
+       build the system, and to allow other applications to build against
+       the installed X Window system."""
+    homepage = "http://www.x.org/"
+    url      = "https://www.x.org/archive//individual/proto/xproto-7.0.29.tar.gz"
+
+    version('7.0.29', '16a78dd2c5ad73011105c96235f6a0af')
+
+    depends_on("xorg-util-macros")
+
+    def install(self, spec, prefix):
+        configure('--prefix=%s' % prefix)
+        make()
+        make("install")