beast1: new package (#7544)

* beast1: new package

* beast1: taking suggestion

1 files changed, 47 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/beast1/package.py b/var/spack/repos/builtin/packages/beast1/package.py
new file mode 100644
index 0000000000..4d04d28c03
--- /dev/null
+++ b/var/spack/repos/builtin/packages/beast1/package.py
@@ -0,0 +1,47 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Beast1(Package):
+    """BEAST is a cross-platform program for Bayesian
+       analysis of molecular sequences using MCMC."""
+
+    homepage = "http://beast.community/"
+    url      = "https://github.com/beast-dev/beast-mcmc/releases/download/v1.8.4/BEASTv1.8.4.tgz"
+
+    version('1.8.4', 'cb8752340c1f77a22d39ca4fe09687b0')
+
+    depends_on('java', type='run')
+
+    def setup_environment(self, spack_env, run_env):
+        run_env.set('BEAST1', self.prefix)
+
+    def install(self, spec, prefix):
+        install_tree('bin', prefix.bin)
+        install_tree('examples', prefix.examples)
+        install_tree('images', prefix.images)
+        install_tree('lib', prefix.lib)
+        install_tree('doc', prefix.doc)