r-ptw: Create new package. (#6062)

1 files changed, 46 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-ptw/package.py b/var/spack/repos/builtin/packages/r-ptw/package.py
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+++ b/var/spack/repos/builtin/packages/r-ptw/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RPtw(RPackage):
+    """Parametric Time Warping aligns patterns, i.e. it aims to put
+    corresponding features at the same locations. The algorithm
+    searches for an optimal polynomial describing the warping. It is
+    possible to align one sample to a reference, several samples to
+    the same reference, or several samples to several references.
+    One can choose between calculating individual warpings, or one
+    global warping for a set of samples and one reference. Two
+    optimization criteria are implemented: RMS (Root Mean Square
+    error) and WCC (Weighted Cross Correlation). Both warping of
+    peak profiles and of peak lists are supported."""
+
+    homepage = "https://cran.r-project.org/package=ptw"
+    url      = "https://cran.rstudio.com/src/contrib/ptw_1.9-12.tar.gz"
+    list_url = "https://cran.rstudio.com/src/contrib/Archive/ptw"
+
+    version('1.9-12', 'ddff887752d789ea72db3ee235ae7c67')
+
+    depends_on('r-nloptr', type=('build', 'run'))