pbbam: switching to meson, adding version 2.1.0 (#32996)

1 files changed, 17 insertions, 20 deletions

diff --git a/var/spack/repos/builtin/packages/pbbam/package.py b/var/spack/repos/builtin/packages/pbbam/package.py
index 31626b9f54..3b53c8c896 100644
--- a/var/spack/repos/builtin/packages/pbbam/package.py
+++ b/var/spack/repos/builtin/packages/pbbam/package.py
@@ -4,46 +4,43 @@
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
 from spack.package import *
-from spack.pkg.builtin.boost import Boost
 
 
-class Pbbam(CMakePackage):
+class Pbbam(MesonPackage):
     """The pbbam software package provides components to create, query,
     & edit PacBio BAM files and associated indices.
     These components include a core C++ library,
     bindings for additional languages, and command-line utilities."""
 
     homepage = "https://github.com/PacificBiosciences/pbbam"
-    url = "https://github.com/PacificBiosciences/pbbam/archive/0.18.0.tar.gz"
-
+    url = "https://github.com/PacificBiosciences/pbbam/archive/refs/tags/0.18.0.tar.gz"
+    maintainers = ["snehring"]
+
+    version(
+        "2.1.0",
+        sha256="605944f09654d964ce12c31d67e6766dfb1513f730ef5d4b74829b2b84dd464f",
+        url="https://github.com/PacificBiosciences/pbbam/archive/refs/tags/v2.1.0.tar.gz",
+    )
     version("0.18.0", sha256="45286e5f7deb7ff629e0643c8a416155915aec7b85d54c60b5cdc07f4d7b234a")
 
     depends_on("zlib")
     depends_on("boost@1.55.0:")
-
-    # TODO: replace this with an explicit list of components of Boost,
-    # for instance depends_on('boost +filesystem')
-    # See https://github.com/spack/spack/pull/22303 for reference
-    depends_on(Boost.with_default_variants)
     depends_on("htslib@1.3.1:")
-    depends_on("doxygen+graphviz")
-
-    conflicts("%gcc@:5.2.0")
+    # newer versions require C17
+    conflicts("%gcc@:7.5.0", when="@2.1.0:")
+    conflicts("%clang@:6.0.1", when="@2.1.0:")
 
-    def cmake_args(self):
+    def meson_args(self):
         options = []
         if self.run_tests:
-            options.append("-DPacBioBAM_build_tests:BOOL=ON")
+            options.append("-Dtests=true")
         else:
-            options.append("-DPacBioBAM_build_tests:BOOL=OFF")
+            options.append("-Dtests=false")
 
         return options
 
-    def install(self, spec, prefix):
-        with working_dir(self.build_directory):
-            install_tree("bin", prefix.bin)
-            install_tree("lib", prefix.lib)
-            install_tree("pbbam", prefix.include.pbbam)
+    def setup_build_environment(self, env):
+        env.set("BOOST_ROOT", self.spec["boost"].prefix)
 
     def setup_dependent_build_environment(self, env, dependent_spec):
         env.set("PacBioBAM_LIBRARIES", self.prefix.lib)