py-dp-gp-cluster: new package at 2019-09-22 (#17549)

* py-dp-gp-cluster: new package

* py-dp-gp-cluster: remove master, add 2019-09-22

* py-dp-gp-cluster: require python2, older gpy, sklearn

* py-dp-gp-cluster: remove cython runtime dep

1 files changed, 33 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py b/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py
new file mode 100644
index 0000000000..42e56516d1
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py
@@ -0,0 +1,33 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+from os import unlink
+from glob import glob
+
+
+class PyDpGpCluster(PythonPackage):
+    """DP_GP_cluster clusters genes by expression over a time course using a
+       Dirichlet process Gaussian process model."""
+
+    homepage = "https://github.com/PrincetonUniversity/DP_GP_cluster"
+    git      = "https://github.com/PrincetonUniversity/DP_GP_cluster.git"
+
+    version('2019-09-22', commit='eec12e74219f916aa86e253783905f7b5e30f6f4')
+
+    depends_on('python@2.7:2.8', type=('build', 'run'))
+
+    depends_on('py-cython', type='build')
+    depends_on('py-gpy@0.8.8:0.9.9', type=('build', 'run'))
+    depends_on('py-pandas', type=('build', 'run'))
+    depends_on('py-numpy', type=('build', 'run'))
+    depends_on('py-scipy@0.14:', type=('build', 'run'))
+    depends_on('py-matplotlib', type=('build', 'run'))
+    depends_on('py-scikit-learn', type=('build', 'run'))
+
+    @run_before('build')
+    def remove_cython_output(self):
+        for f in glob('DP_GP/*.c'):
+            unlink(f)