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authorAudrey Thoma <las_thoma15@iastate.edu>2017-07-24 18:02:20 -0500
committerAdam J. Stewart <ajstewart426@gmail.com>2017-07-24 18:02:20 -0500
commit8038945145d9e3777bbf48a37a65366b54263558 (patch)
tree1c3c5139a14ddabdf3488a503d80947ffe27a0e2 /var
parent0c96c330ec1281bbf8cc44fad922964448a8ddb0 (diff)
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structure: new package (#4879)
* structure: new pacakge * fixing package structure (not a pun)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/structure/package.py47
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diff --git a/var/spack/repos/builtin/packages/structure/package.py b/var/spack/repos/builtin/packages/structure/package.py
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+++ b/var/spack/repos/builtin/packages/structure/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Structure(MakefilePackage):
+ """Structure is a free software package for using multi-locus genotype
+ data to investigate population structure."""
+
+ homepage = "http://web.stanford.edu/group/pritchardlab/structure.html"
+ url = "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz"
+
+ version('2.3.4', '4e0591678cdbfe79347d272b5dceeda1')
+
+ depends_on('jdk', type=('build', 'run'))
+
+ def url_for_version(self, version):
+ url = "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v{0}/structure_kernel_source.tar.gz"
+ return url.format(version)
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ install('structure', prefix.bin)
+ install('mainparams', prefix.bin)
+ install('extraparams', prefix.bin)