New package - r-ncdf4

Interface to Unidata netCDF (version 4 or earlier) format data files.

1 files changed, 56 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-ncdf4/package.py b/var/spack/repos/builtin/packages/r-ncdf4/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RNcdf4(Package):
+    """Provides a high-level R interface to data files written using Unidata's
+    netCDF library (version 4 or earlier), which are binary data files that are
+    portable across platforms and include metadata information in addition to
+    the data sets. Using this package, netCDF files (either version 4 or
+    "classic" version 3) can be opened and data sets read in easily. It is also
+    easy to create new netCDF dimensions, variables, and files, in either
+    version 3 or 4 format, and manipulate existing netCDF files. This package
+    replaces the former ncdf package, which only worked with netcdf version 3
+    files. For various reasons the names of the functions have had to be
+    changed from the names in the ncdf package. The old ncdf package is still
+    available at the URL given below, if you need to have backward
+    compatibility. It should be possible to have both the ncdf and ncdf4
+    packages installed simultaneously without a problem. However, the ncdf
+    package does not provide an interface for netcdf version 4 files."""
+
+    homepage = "http://cirrus.ucsd.edu/~pierce/ncdf"
+    url      = "https://cran.r-project.org/src/contrib/ncdf4_1.15.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/ncdf4"
+
+    version('1.15', 'cd60dadbae3be31371e1ed40ddeb420a')
+
+    extends('R')
+
+    depends_on('netcdf')
+
+    def install(self, spec, prefix):
+        R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
+          self.stage.source_path)