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authorlingnanyuan <1297162327@qq.com>2017-10-03 17:04:18 -0500
committerChristoph Junghans <christoph.junghans@gmail.com>2017-10-03 16:04:18 -0600
commita05964959db91306ed5204ffec3384706ae92258 (patch)
tree516ea076ed892622ae08580e8b64d307b6a47d9a /var
parente858e4de17fe370b41e27822ad446b8b157c8491 (diff)
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r-a4base: new package. (#5576)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/r-a4base/package.py46
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-a4base/package.py b/var/spack/repos/builtin/packages/r-a4base/package.py
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+++ b/var/spack/repos/builtin/packages/r-a4base/package.py
@@ -0,0 +1,46 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RA4base(RPackage):
+ """Automated Affymetrix Array Analysis."""
+
+ homepage = "https://www.bioconductor.org/packages/a4Base/"
+ url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/a4Base_1.24.0.tar.gz"
+ list_url = homepage
+ version('1.24.0', '98f53cb437f1b8bb7ba8c2628c0f44c6')
+
+ depends_on('r-biobase', type=('build', 'run'))
+ depends_on('r-annotationdbi', type=('build', 'run'))
+ depends_on('r-annaffy', type=('build', 'run'))
+ depends_on('r-mpm', type=('build', 'run'))
+ depends_on('r-genefilter', type=('build', 'run'))
+ depends_on('r-limma', type=('build', 'run'))
+ depends_on('r-multtest', type=('build', 'run'))
+ depends_on('r-glmnet', type=('build', 'run'))
+ depends_on('r-a4preproc', type=('build', 'run'))
+ depends_on('r-a4core', type=('build', 'run'))
+ depends_on('r-gplots', type=('build', 'run'))