Andi and libdivsufsort (#4559)

* andi: adding andi and libdivsufsort

* andi: adding andi and dependency libdivsufsort

* andi: adding andi and dependency libdivsufsort

* andi: fixing autotool dependency types

* andi: fixed whitespace to make flake8 compliant

2 files changed, 77 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/andi/package.py b/var/spack/repos/builtin/packages/andi/package.py
new file mode 100644
index 0000000000..0d48ad69af
--- /dev/null
+++ b/var/spack/repos/builtin/packages/andi/package.py
@@ -0,0 +1,42 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Andi(AutotoolsPackage):
+    """andi is used for for estimating the
+    evolutionary distance between closely related genomes."""
+
+    homepage = "https://github.com/EvolBioInf/andi"
+    url      = "https://github.com/EvolBioInf/andi/archive/v0.10.tar.gz"
+
+    version('0.10',    '3aaba7961798bb4aaa546baa44e469d8')
+
+    depends_on('m4', type='build')
+    depends_on('autoconf', type='build')
+    depends_on('automake', type='build')
+    depends_on('libtool', type='build')
+    depends_on('gsl')
+    depends_on('libdivsufsort')
diff --git a/var/spack/repos/builtin/packages/libdivsufsort/package.py b/var/spack/repos/builtin/packages/libdivsufsort/package.py
new file mode 100644
index 0000000000..88355f8725
--- /dev/null
+++ b/var/spack/repos/builtin/packages/libdivsufsort/package.py
@@ -0,0 +1,35 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Libdivsufsort(CMakePackage):
+    """libdivsufsort is a software library that implements a
+     lightweight suffix array construction algorithm."""
+
+    homepage = "https://github.com/y-256/libdivsufsort"
+    url      = "https://github.com/y-256/libdivsufsort/archive/2.0.1.tar.gz"
+
+    version('2.0.1', 'a75c6be4715d3d659936f3a1ab8cb5c0')