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| author | Justin S <3630356+codeandkey@users.noreply.github.com> | 2020-05-22 10:17:43 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-05-22 17:17:43 +0200 |
| commit | d2d35f80d194fee3e1bdeea1d31ea8e3ff5948bf (patch) | |
| tree | 0d962303ba8435cfcde13942b9a0b645abdb6239 /var | |
| parent | c9df2dea953a309c008a26ce525299f5e36c7fd6 (diff) | |
| download | spack-d2d35f80d194fee3e1bdeea1d31ea8e3ff5948bf.tar.gz spack-d2d35f80d194fee3e1bdeea1d31ea8e3ff5948bf.tar.bz2 spack-d2d35f80d194fee3e1bdeea1d31ea8e3ff5948bf.tar.xz spack-d2d35f80d194fee3e1bdeea1d31ea8e3ff5948bf.zip | |
fraggenescan: new package at v1.31 (#16587)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/fraggenescan/package.py | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fraggenescan/package.py b/var/spack/repos/builtin/packages/fraggenescan/package.py new file mode 100644 index 0000000000..c1af71a829 --- /dev/null +++ b/var/spack/repos/builtin/packages/fraggenescan/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Fraggenescan(MakefilePackage): + """FragGeneScan is an application for finding (fragmented) genes in short + reads. It can also be applied to predict prokaryotic genes in + incomplete assemblies or complete genomes.""" + + homepage = "https://sourceforge.net/projects/fraggenescan/" + url = "https://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.31.tar.gz" + + version('1.31', sha256='cd3212d0f148218eb3b17d24fcd1fc897fb9fee9b2c902682edde29f895f426c') + + build_targets = ['fgs'] + + def edit(self, spec, prefix): + filter_file('gcc', spack_cc, 'Makefile', string=True) + + def install(self, spec, prefix): + install_tree('.', prefix.bin) |