r-rms: New package (#16683)

* r-rms: New package

* r-rms: deleted duplicated dependency

* r-rms: deleting comma

1 files changed, 48 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-rms/package.py b/var/spack/repos/builtin/packages/r-rms/package.py
new file mode 100644
index 0000000000..1090e0e546
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-rms/package.py
@@ -0,0 +1,48 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RRms(RPackage):
+    """Regression modeling, testing, estimation, validation, graphics,
+       prediction, and typesetting by storing enhanced model design
+       attributes in the fit. 'rms' is a collection of functions that
+       assist with and streamline modeling. It also contains functions
+       for binary and ordinal logistic regression models, ordinal models
+       for continuous Y with a variety of distribution families, and the
+       Buckley-James multiple regression model for right-censored responses,
+       and implements penalized maximum likelihood estimation for logistic
+       and ordinary linear models. 'rms' works with almost any regression
+       model, but it was especially written to work with binary or ordinal
+       regression models, Cox regression, accelerated failure time models,
+       ordinary linear models, the Buckley-James model, generalized least
+       squares for serially or spatially correlated observations,
+       generalized linear models, and quantile regression.
+    """
+
+    homepage = "https://cloud.r-project.org/package=rms"
+    url      = "https://cloud.r-project.org/src/contrib/rms_5.1-4.tar.gz"
+    list_url = "https://cloud.r-project.org/src/contrib/Archive/rms"
+
+    version('5.1-4',   sha256='38f5844c4944a95b2adebea6bb1d163111270b8662399ea0349c45c0758076a6')
+    version('5.1-3.1', sha256='0946d9547a4e3ff020a61ab3fce38f88aa9545729683e2bfefeb960edec82b37')
+    version('5.1-3',   sha256='5fc7120d8a93b4aa9727d82eac368c5c47ff70f467ae2b012afac688235089eb')
+    version('5.1-2',   sha256='f1cfeef466ac436105756679353a3468027d97a600e3be755b819aef30ed9207')
+    version('5.1-1',   sha256='c489948df5c434b40bcf5288844f5b4e08d157f36939d09230c1600f88d1bfe3')
+
+    depends_on('r@3.5:', type=('build', 'run'))
+    depends_on('r-hmisc@4.3:', type=('build', 'run'))
+    depends_on('r-survival@3.1-6', type=('build', 'run'))
+    depends_on('r-lattice', type=('build', 'run'))
+    depends_on('r-polspline', type=('build', 'run'))
+    depends_on('r-ggplot2@2.2:', type=('build', 'run'))
+    depends_on('r-sparsem', type=('build', 'run'))
+    depends_on('r-quantreg', type=('build', 'run'))
+    depends_on('r-rpart', type=('build', 'run'))
+    depends_on('r-nlme@3.1-123:', type=('build', 'run'))
+    depends_on('r-multcomp', type=('build', 'run'))
+    depends_on('r-htmltable@1.11.0:', type=('build', 'run'))
+    depends_on('r-htmltools', type=('build', 'run'))