Merge remote-tracking branch 'upstream/develop' into develop

21 files changed, 320 insertions, 7 deletions

diff --git a/var/spack/packages/asciidoc/package.py b/var/spack/packages/asciidoc/package.py
new file mode 100644
index 0000000000..828f3b3f4f
--- /dev/null
+++ b/var/spack/packages/asciidoc/package.py
@@ -0,0 +1,18 @@
+from spack import *
+
+class Asciidoc(Package):
+    """ A presentable text document format for writing articles, UNIX man
+    pages and other small to medium sized documents."""
+    homepage = "http://asciidoc.org"
+    url      = "http://downloads.sourceforge.net/project/asciidoc/asciidoc/8.6.9/asciidoc-8.6.9.tar.gz"
+
+    version('8.6.9', 'c59018f105be8d022714b826b0be130a')
+
+    depends_on('libxml2')
+    depends_on('libxslt')
+
+    def install(self, spec, prefix):
+        configure('--prefix=%s' % prefix)
+
+        make()
+        make("install")
diff --git a/var/spack/packages/bear/package.py b/var/spack/packages/bear/package.py
new file mode 100644
index 0000000000..0d4436fccc
--- /dev/null
+++ b/var/spack/packages/bear/package.py
@@ -0,0 +1,17 @@
+from spack import *
+
+class Bear(Package):
+    """Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems."""
+    homepage = "https://github.com/rizsotto/Bear"
+    url      = "https://github.com/rizsotto/Bear/archive/2.0.4.tar.gz"
+
+    version('2.0.4', 'fd8afb5e8e18f8737ba06f90bd77d011')
+
+    depends_on("cmake")
+    depends_on("python")
+
+    def install(self, spec, prefix):
+        cmake('.', *std_cmake_args)
+
+        make("all")
+        make("install")
diff --git a/var/spack/packages/cscope/package.py b/var/spack/packages/cscope/package.py
new file mode 100644
index 0000000000..9aac0f7304
--- /dev/null
+++ b/var/spack/packages/cscope/package.py
@@ -0,0 +1,17 @@
+from spack import *
+
+class Cscope(Package):
+    """Cscope is a developer's tool for browsing source code."""
+    homepage = "http://http://cscope.sourceforge.net/"
+    url      = "http://downloads.sourceforge.net/project/cscope/cscope/15.8b/cscope-15.8b.tar.gz"
+
+    version('15.8b', '8f9409a238ee313a96f9f87fe0f3b176')
+
+    # Can be configured to use flex (not necessary)
+    # ./configure --with-flex
+
+    def install(self, spec, prefix):
+        configure('--prefix=%s' % prefix)
+
+        make()
+        make("install")
diff --git a/var/spack/packages/czmq/package.py b/var/spack/packages/czmq/package.py
new file mode 100644
index 0000000000..a2f1947554
--- /dev/null
+++ b/var/spack/packages/czmq/package.py
@@ -0,0 +1,19 @@
+from spack import *
+
+class Czmq(Package):
+    """ A C interface to the ZMQ library """
+    homepage = "http://czmq.zeromq.org"
+    url      = "https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz"
+
+    version('3.0.2', '23e9885f7ee3ce88d99d0425f52e9be1', url='https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz')
+
+    depends_on('zeromq')
+
+    def install(self, spec, prefix):
+        bash = which("bash")
+        bash("./autogen.sh")
+        configure("--prefix=%s" % prefix)
+
+        make()
+        make("install")
+
diff --git a/var/spack/packages/docbook-xml/package.py b/var/spack/packages/docbook-xml/package.py
new file mode 100644
index 0000000000..fce1de7deb
--- /dev/null
+++ b/var/spack/packages/docbook-xml/package.py
@@ -0,0 +1,19 @@
+import os
+import glob
+from spack import *
+
+
+class DocbookXml(Package):
+    """Docbook DTD XML files."""
+    homepage = "http://www.oasis-open.org/docbook"
+    url = "http://www.oasis-open.org/docbook/xml/4.5/docbook-xml-4.5.zip"
+
+    version('4.5', '03083e288e87a7e829e437358da7ef9e')
+
+    def install(self, spec, prefix):
+        cp = which('cp')
+
+        install_args = ['-a', '-t', prefix]
+        install_args.extend(glob.glob('*'))
+
+        cp(*install_args)
diff --git a/var/spack/packages/flux/package.py b/var/spack/packages/flux/package.py
new file mode 100644
index 0000000000..c128f46be8
--- /dev/null
+++ b/var/spack/packages/flux/package.py
@@ -0,0 +1,36 @@
+from spack import *
+import os
+
+class Flux(Package):
+    """ A next-generation resource manager (pre-alpha) """
+
+    homepage = "https://github.com/flux-framework/flux-core"
+    url      = "https://github.com/flux-framework/flux-core"
+
+    version('master', branch='master', git='https://github.com/flux-framework/flux-core')
+
+    # Also needs autotools, but should use the system version if available
+    depends_on("zeromq@4.0.4:")
+    depends_on("czmq@2.2:")
+    depends_on("lua@5.1:5.1.99")
+    depends_on("munge")
+    depends_on("libjson-c")
+    depends_on("libxslt")
+    # TODO: This provides a catalog, hacked with environment below for now
+    depends_on("docbook-xml")
+    depends_on("asciidoc")
+    depends_on("python")
+    depends_on("py-cffi")
+
+    def install(self, spec, prefix):
+        # Bootstrap with autotools
+        bash = which('bash')
+        bash('./autogen.sh')
+
+        # Fix asciidoc dependency on xml style sheets and whatnot
+        os.environ['XML_CATALOG_FILES'] = os.path.join(spec['docbook-xml'].prefix,
+                                                       'catalog.xml')
+        # Configure, compile & install
+        configure("--prefix=" + prefix)
+        make("install", "V=1")
+
diff --git a/var/spack/packages/libjson-c/package.py b/var/spack/packages/libjson-c/package.py
new file mode 100644
index 0000000000..c0801cce9c
--- /dev/null
+++ b/var/spack/packages/libjson-c/package.py
@@ -0,0 +1,14 @@
+from spack import *
+
+class LibjsonC(Package):
+    """ A JSON implementation in C """
+    homepage = "https://github.com/json-c/json-c/wiki"
+    url      = "https://s3.amazonaws.com/json-c_releases/releases/json-c-0.11.tar.gz"
+
+    version('0.11', 'aa02367d2f7a830bf1e3376f77881e98')
+
+    def install(self, spec, prefix):
+        configure('--prefix=%s' % prefix)
+
+        make()
+        make("install")
diff --git a/var/spack/packages/libpciaccess/package.py b/var/spack/packages/libpciaccess/package.py
new file mode 100644
index 0000000000..6022fc34a3
--- /dev/null
+++ b/var/spack/packages/libpciaccess/package.py
@@ -0,0 +1,21 @@
+from spack import *
+
+class Libpciaccess(Package):
+    """Generic PCI access library."""
+
+    homepage = "http://cgit.freedesktop.org/xorg/lib/libpciaccess/"
+    url      = "http://cgit.freedesktop.org/xorg/lib/libpciaccess/"
+
+    version('0.13.4', git='http://anongit.freedesktop.org/git/xorg/lib/libpciaccess.git',
+            tag='libpciaccess-0.13.4')
+
+    depends_on('autoconf')
+    depends_on('libtool')
+
+    def install(self, spec, prefix):
+        from subprocess import call
+        call(["./autogen.sh"])
+        configure("--prefix=%s" % prefix)
+
+        make()
+        make("install")
diff --git a/var/spack/packages/libsodium/package.py b/var/spack/packages/libsodium/package.py
new file mode 100644
index 0000000000..1c8a16d998
--- /dev/null
+++ b/var/spack/packages/libsodium/package.py
@@ -0,0 +1,19 @@
+from spack import *
+
+class Libsodium(Package):
+    """Sodium is a modern, easy-to-use software library for encryption,
+    decryption, signatures, password hashing and more."""
+    homepage = "https://download.libsodium.org/doc/"
+    url      = "https://download.libsodium.org/libsodium/releases/libsodium-1.0.3.tar.gz"
+
+    version('1.0.3', 'b3bcc98e34d3250f55ae196822307fab')
+    version('1.0.2', 'dc40eb23e293448c6fc908757738003f')
+    version('1.0.1', '9a221b49fba7281ceaaf5e278d0f4430')
+    version('1.0.0', '3093dabe4e038d09f0d150cef064b2f7')
+    version('0.7.1', 'c224fe3923d1dcfe418c65c8a7246316')
+
+    def install(self, spec, prefix):
+        configure("--prefix=%s" % prefix)
+
+        make()
+        make("install")
diff --git a/var/spack/packages/libxml2/package.py b/var/spack/packages/libxml2/package.py
index 72199d8def..3a0af6b368 100644
--- a/var/spack/packages/libxml2/package.py
+++ b/var/spack/packages/libxml2/package.py
@@ -9,11 +9,12 @@ class Libxml2(Package):
 
     version('2.9.2', '9e6a9aca9d155737868b3dc5fd82f788')
 
+    extends('python')
     depends_on('zlib')
     depends_on('xz')
 
     def install(self, spec, prefix):
-        configure("--prefix=%s" % prefix,
-                  "--without-python")
+        configure("--prefix=%s" % prefix)
+
         make()
         make("install")
diff --git a/var/spack/packages/lua/package.py b/var/spack/packages/lua/package.py
new file mode 100644
index 0000000000..57c443cc2d
--- /dev/null
+++ b/var/spack/packages/lua/package.py
@@ -0,0 +1,26 @@
+from spack import *
+import os
+
+class Lua(Package):
+    """ The Lua programming language interpreter and library """
+    homepage = "http://www.lua.org"
+    url      = "http://www.lua.org/ftp/lua-5.1.5.tar.gz"
+
+    version('5.3.1', '797adacada8d85761c079390ff1d9961')
+    version('5.3.0', 'a1b0a7e92d0c85bbff7a8d27bf29f8af')
+    version('5.2.4', '913fdb32207046b273fdb17aad70be13')
+    version('5.2.3', 'dc7f94ec6ff15c985d2d6ad0f1b35654')
+    version('5.2.2', 'efbb645e897eae37cad4344ce8b0a614')
+    version('5.2.1', 'ae08f641b45d737d12d30291a5e5f6e3')
+    version('5.2.0', 'f1ea831f397214bae8a265995ab1a93e')
+    version('5.1.5', '2e115fe26e435e33b0d5c022e4490567')
+    version('5.1.4', 'd0870f2de55d59c1c8419f36e8fac150')
+    version('5.1.3', 'a70a8dfaa150e047866dc01a46272599')
+
+    depends_on('ncurses')
+
+    def install(self, spec, prefix):
+        make('INSTALL_TOP=%s' % prefix,
+             'MYLDFLAGS=-L%s/lib' % spec['ncurses'].prefix,
+             'linux',
+             'install')
diff --git a/var/spack/packages/mesa/package.py b/var/spack/packages/mesa/package.py
index 2dba878a77..2a04a8fd51 100644
--- a/var/spack/packages/mesa/package.py
+++ b/var/spack/packages/mesa/package.py
@@ -1,7 +1,7 @@
 from spack import *
 
 class Mesa(Package):
-    """Mesa is an open-source implementation of the OpenGL 
+    """Mesa is an open-source implementation of the OpenGL
     specification - a system for rendering interactive 3D graphics."""
 
     homepage = "http://www.mesa3d.org"
@@ -11,9 +11,10 @@ class Mesa(Package):
     # version('10.4.4', '8d863a3c209bf5116b2babfccccc68ce')
     version('8.0.5', 'cda5d101f43b8784fa60bdeaca4056f2')
 
-    # mesa 7.x, 8.x, 9.x 
+    # mesa 7.x, 8.x, 9.x
     depends_on("libdrm@2.4.33")
     depends_on("llvm@3.0")
+    depends_on("libxml2")
 
     # patch("llvm-fixes.patch") # using newer llvm
 
diff --git a/var/spack/packages/mpfr/package.py b/var/spack/packages/mpfr/package.py
index 3cd8ec41e4..9c744a22df 100644
--- a/var/spack/packages/mpfr/package.py
+++ b/var/spack/packages/mpfr/package.py
@@ -33,6 +33,8 @@ class Mpfr(Package):
     version('3.1.3', '5fdfa3cfa5c86514ee4a241a1affa138')
     # version('3.1.2', 'ee2c3ac63bf0c2359bf08fc3ee094c19')
 
+    depends_on('gmp')
+
     def install(self, spec, prefix):
         configure("--prefix=%s" % prefix)
         make()
diff --git a/var/spack/packages/munge/package.py b/var/spack/packages/munge/package.py
new file mode 100644
index 0000000000..c737ca0354
--- /dev/null
+++ b/var/spack/packages/munge/package.py
@@ -0,0 +1,20 @@
+from spack import *
+import os
+
+class Munge(Package):
+    """ MUNGE Uid 'N' Gid Emporium """
+    homepage = "https://code.google.com/p/munge/"
+    url      = "https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2"
+
+    version('0.5.11', 'bd8fca8d5f4c1fcbef1816482d49ee01', url='https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2')
+
+    depends_on('openssl')
+    depends_on('libgcrypt')
+
+    def install(self, spec, prefix):
+        os.makedirs(os.path.join(prefix, "lib/systemd/system"))
+        configure("--prefix=%s" % prefix)
+
+        make()
+        make("install")
+
diff --git a/var/spack/packages/ncurses/package.py b/var/spack/packages/ncurses/package.py
index a22e83503f..8f5763bfdd 100644
--- a/var/spack/packages/ncurses/package.py
+++ b/var/spack/packages/ncurses/package.py
@@ -21,3 +21,11 @@ class Ncurses(Package):
         make()
         make("install")
 
+        configure("--prefix=%s" % prefix,
+                  "--with-shared",
+                  "--disable-widec",
+                  "--disable-pc-files",
+                  "--without-ada")
+        make()
+        make("install")
+
diff --git a/var/spack/packages/py-mock/package.py b/var/spack/packages/py-mock/package.py
new file mode 100644
index 0000000000..3b08428ba0
--- /dev/null
+++ b/var/spack/packages/py-mock/package.py
@@ -0,0 +1,17 @@
+from spack import *
+
+class PyMock(Package):
+    """mock is a library for testing in Python. It allows you to replace parts
+    of your system under test with mock objects and make assertions about how
+    they have been used."""
+
+    homepage = "https://github.com/testing-cabal/mock"
+    url      = "https://pypi.python.org/packages/source/m/mock/mock-1.3.0.tar.gz"
+
+    version('1.3.0', '73ee8a4afb3ff4da1b4afa287f39fdeb')
+
+    extends('python')
+    depends_on('py-setuptools@17.1:')
+
+    def install(self, spec, prefix):
+        python('setup.py', 'install', '--prefix=%s' % prefix)
diff --git a/var/spack/packages/py-pandas/package.py b/var/spack/packages/py-pandas/package.py
index acbb5114a3..5b9997faa9 100644
--- a/var/spack/packages/py-pandas/package.py
+++ b/var/spack/packages/py-pandas/package.py
@@ -16,6 +16,10 @@ class PyPandas(Package):
     depends_on('py-scipy')
     depends_on('py-setuptools')
     depends_on('py-pytz')
+    depends_on('libdrm')
+    depends_on('libpciaccess')
+    depends_on('llvm')
+    depends_on('mesa')
 
     def install(self, spec, prefix):
         python('setup.py', 'install', '--prefix=%s' % prefix)
diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/packages/py-setuptools/package.py
index d3f11ed469..760ad4d6db 100644
--- a/var/spack/packages/py-setuptools/package.py
+++ b/var/spack/packages/py-setuptools/package.py
@@ -7,6 +7,7 @@ class PySetuptools(Package):
 
     version('11.3.1', '01f69212e019a2420c1693fb43593930')
     version('16.0', '0ace0b96233516fc5f7c857d086aa3ad')
+    version('18.1', 'f72e87f34fbf07f299f6cb46256a0b06')
 
     extends('python')
 
diff --git a/var/spack/packages/vim/package.py b/var/spack/packages/vim/package.py
index d0cf80b898..4099b3257f 100644
--- a/var/spack/packages/vim/package.py
+++ b/var/spack/packages/vim/package.py
@@ -35,15 +35,26 @@ class Vim(Package):
     variant('ruby', default=False, description="build with Ruby")
     depends_on('ruby', when='+ruby')
 
+    variant('cscope', default=False, description="build with cscope support")
+    depends_on('cscope', when='+cscope')
+
+    variant('gui', default=False, description="build with gui (gvim)")
+    # virtual dependency?
+
     def install(self, spec, prefix):
       feature_set = None
       for fs in self.feature_sets:
         if "+" + fs in spec:
           if feature_set is not None:
-            tty.error("Only one feature set allowed, both {} and {} specified".format(
-              feature_set,
-              fs))
+            tty.error("Only one feature set allowed, both %s and %s specified"
+                      % (feature_set, fs))
           feature_set = fs
+      if '+gui' in spec:
+        if feature_set is not None:
+          if feature_set is not 'huge':
+            tty.error("+gui variant requires 'huge' feature set, %s was specified"
+                      % feature_set)
+        feature_set = 'huge'
       if feature_set is None:
         feature_set = 'normal'
 
@@ -60,6 +71,12 @@ class Vim(Package):
       else:
         configure_args.append("--enable-rubyinterp=dynamic")
 
+      if '+gui' in spec:
+        configure_args.append("--enable-gui=auto")
+
+      if '+cscope' in spec:
+        configure_args.append("--enable-cscope")
+
       configure("--prefix=%s" % prefix, *configure_args)
 
       make()
diff --git a/var/spack/packages/zeromq/package.py b/var/spack/packages/zeromq/package.py
new file mode 100644
index 0000000000..b5a1e3d4cd
--- /dev/null
+++ b/var/spack/packages/zeromq/package.py
@@ -0,0 +1,20 @@
+from spack import *
+
+class Zeromq(Package):
+    """ The ZMQ networking/concurrency library and core API """
+    homepage = "http://zguide.zeromq.org/"
+    url      = "http://download.zeromq.org/zeromq-4.1.2.tar.gz"
+
+    version('4.1.2', '159c0c56a895472f02668e692d122685')
+    version('4.1.1', '0a4b44aa085644f25c177f79dc13f253')
+    version('4.0.7', '9b46f7e7b0704b83638ef0d461fd59ab')
+    version('4.0.6', 'd47dd09ed7ae6e7fd6f9a816d7f5fdf6')
+    version('4.0.5', '73c39f5eb01b9d7eaf74a5d899f1d03d')
+
+    depends_on("libsodium")
+
+    def install(self, spec, prefix):
+        configure("--with-libsodium","--prefix=%s" % prefix)
+
+        make()
+        make("install")
diff --git a/var/spack/packages/zsh/package.py b/var/spack/packages/zsh/package.py
new file mode 100644
index 0000000000..99ef9de2e5
--- /dev/null
+++ b/var/spack/packages/zsh/package.py
@@ -0,0 +1,16 @@
+from spack import *
+
+class Zsh(Package):
+    """ The ZSH shell """
+    homepage = "http://www.zsh.org"
+    url      = "http://www.zsh.org/pub/zsh-5.0.8.tar.bz2"
+
+    version('5.0.8', 'e6759e8dd7b714d624feffd0a73ba0fe')
+
+    depends_on("pcre")
+
+    def install(self, spec, prefix):
+        configure('--prefix=%s' % prefix)
+
+        make()
+        make("install")