package/r-rjags: create new package (#6804)

* package/r-rjags: create new package

* fix typo

fix typo

* package/r-rjags small fix to pass flake8 tests

* package/r-rjags: more fixes to satisfy flake8 tests

1 files changed, 46 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-rjags/package.py b/var/spack/repos/builtin/packages/r-rjags/package.py
new file mode 100644
index 0000000000..ec56d8c3af
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-rjags/package.py
@@ -0,0 +1,46 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class RRjags(RPackage):
+    """Interface to the JAGS MCMC library.
+       Usage: $ spack load r-rjags """
+
+    homepage = "https://cran.r-project.org/web/packages/rjags/index.html"
+    url      = "https://cran.r-project.org/src/contrib/rjags_4-6.tar.gz"
+
+    version('4-6', 'c26b7cc8e8ddcdb55e14cba28df39f4c')
+
+    depends_on('jags', type=('link'))
+    depends_on('r-coda', type=('build', 'run'))
+
+    def configure_args(self):
+        args = ['--with-jags-lib=%s' % self.spec['jags'].prefix.lib,
+                '--with-jags-include=%s' % self.spec['jags'].prefix.include,
+                '--with-jags-modules=%s/JAGS/modules-4'
+                % self.spec['jags'].prefix.lib]
+        return args