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| author | lingnanyuan <1297162327@qq.com> | 2017-10-18 20:07:04 -0500 |
|---|---|---|
| committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-10-18 19:07:04 -0600 |
| commit | 6642f62eb931ec3ae6555aecc80c695b6e678142 (patch) | |
| tree | 7e4f6855ef55a91063de2c298e3eb57c4469f1e4 /var | |
| parent | 5e2c4dbb5c419ff0e27529d43ddf84e814e0ba67 (diff) | |
| download | spack-6642f62eb931ec3ae6555aecc80c695b6e678142.tar.gz spack-6642f62eb931ec3ae6555aecc80c695b6e678142.tar.bz2 spack-6642f62eb931ec3ae6555aecc80c695b6e678142.tar.xz spack-6642f62eb931ec3ae6555aecc80c695b6e678142.zip | |
r-affyexpress: Create new package. (#5807)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-affyexpress/package.py | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-affyexpress/package.py b/var/spack/repos/builtin/packages/r-affyexpress/package.py new file mode 100644 index 0000000000..a8dd089ab2 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-affyexpress/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAffyexpress(RPackage): + """The purpose of this package is to provide a comprehensive and + easy-to-use tool for quality assessment and to identify differentially + expressed genes in the Affymetrix gene expression data.""" + + homepage = "https://www.bioconductor.org/packages/AffyExpress/" + url = "https://git.bioconductor.org/packages/AffyExpress" + + version('1.42.0', git='https://git.bioconductor.org/packages/AffyExpress', commit='f5c5cf6173f4419e25f4aeff5e6b705a40abc371') + + depends_on('r@3.4.0:3.4.9', when='@1.42.0') + depends_on('r-affy', type=('build', 'run')) + depends_on('r-limma', type=('build', 'run')) |