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| author | ilbiondo <61497728+ilbiondo@users.noreply.github.com> | 2020-11-04 19:37:15 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-11-04 12:37:15 -0600 |
| commit | ab046403f66e9fd833f9293624cec967882725b1 (patch) | |
| tree | 298afc34213da0cc091a903a579f52287df163f4 /var | |
| parent | 5b02910e9cbc351d9ddd78ebba98bda5bdb9c058 (diff) | |
| download | spack-ab046403f66e9fd833f9293624cec967882725b1.tar.gz spack-ab046403f66e9fd833f9293624cec967882725b1.tar.bz2 spack-ab046403f66e9fd833f9293624cec967882725b1.tar.xz spack-ab046403f66e9fd833f9293624cec967882725b1.zip | |
admixtools package (#19727)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/admixtools/package.py | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/admixtools/package.py b/var/spack/repos/builtin/packages/admixtools/package.py new file mode 100644 index 0000000000..5b22451552 --- /dev/null +++ b/var/spack/repos/builtin/packages/admixtools/package.py @@ -0,0 +1,45 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Admixtools(MakefilePackage): + """The ADMIXTOOLS package implements 5 methods described in + Patterson et al. (2012) Ancient Admixture in Human History. Details + of the methods and algorithm can be found in this paper..""" + + homepage = "https://github.com/DReichLab/AdmixTools" + url = "https://github.com/DReichLab/AdmixTools/archive/v7.0.1.tar.gz" + + version('7.0.1', sha256='182dd6f55109e9a1569b47843b0d1aa89fe4cf4a05f9292519b9811faea67a20') + version('7.0', sha256='c00faab626f02bbf9c25c6d2dcf661db225776e9ed61251f164e5edeb5a448e5') + version('6.0', sha256='8fcd6c6834c7b33afdd7188516856d9c66b53c33dc82e133b72b56714fb67ad5') + version('5.1', sha256='42b584cc785abfdfa9f39a341bdf81f800639737feaf3d07702de4a2e373557e') + version('5.0', sha256='9f00637eac84c1ca152b65313d803616ee62c4156c7c737a33f5b31aeeac1367') + version('1.0.1', sha256='ef3afff161e6a24c0857678373138edb1251c24d7b5308a07f10bdb0dedd44d0') + version('1.0', sha256='cf0d6950285e801e8a99c2a0b3dbbbc941a78e867af1767b1d002ec3f5803c4b') + + depends_on('lapack') + depends_on('gsl') + + build_directory = 'src' + + def edit(self, spec, prefix): + makefile = FileFilter('src/Makefile') + + lapackflags = spec['lapack'].libs.ld_flags + + makefile.filter('override LDLIBS += -lgsl -lopenblas -lm -lnick', + 'override LDLIBS += -lgsl -lm -lnick ' + lapackflags) + + makefile.filter('TOP=../bin', 'TOP=./bin') + + def install(self, spec, prefix): + with working_dir('src'): + + make('install') + install_tree('bin', prefix.bin) + install('twtable', prefix.bin) |