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authorToyohisa Kameyama <kameyama@riken.jp>2020-04-21 06:36:36 +0900
committerGitHub <noreply@github.com>2020-04-20 16:36:36 -0500
commitc6ef9c2b87cefc26e2c4dc34c80e6ab951a011c4 (patch)
tree7a1f3e9c52707cab825df2973175b193c3268ccb /var
parent8e7f55e6d67a8f464fb543bb022add79562d05bf (diff)
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Add ppOpen-APPL/FDM and ppOpen-APPL/FDM-AT. (#16116)
Diffstat (limited to 'var')
-rwxr-xr-xvar/spack/repos/builtin/packages/ppopen-appl-fdm-at/package.py50
-rwxr-xr-xvar/spack/repos/builtin/packages/ppopen-appl-fdm/gfortran_iargc.patch13
-rwxr-xr-xvar/spack/repos/builtin/packages/ppopen-appl-fdm/package.py137
-rwxr-xr-xvar/spack/repos/builtin/packages/ppopen-appl-fdm/unused.patch13
-rw-r--r--var/spack/repos/builtin/packages/ppopen-math-vis/package.py6
5 files changed, 219 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/ppopen-appl-fdm-at/package.py b/var/spack/repos/builtin/packages/ppopen-appl-fdm-at/package.py
new file mode 100755
index 0000000000..a8ab4fb9e8
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ppopen-appl-fdm-at/package.py
@@ -0,0 +1,50 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+import os
+
+
+class PpopenApplFdmAt(MakefilePackage):
+ """ppOpen-APPL/FDM with Auto-Tuning"""
+
+ homepage = "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/"
+ url = "file://{0}/ppohFDM_AT_1.0.0.tar.gz".format(os.getcwd())
+
+ version('1.0.0', sha256='f6052b73250a41b2b319b27efc4d753c6ec1f67cd109b53099c2b240f7acd65a')
+
+ depends_on('mpi')
+ # depends_on('ppopen-appl-fdm', type='build')
+
+ build_directory = "3.hybrid_AT"
+ parallel = False
+
+ def edit(self, spec, prefix):
+ with working_dir(self.build_directory):
+ fflags = ['-O3', self.compiler.openmp_flag]
+ if spec.satisfies('%gcc'):
+ fflags.append('-ffree-line-length-none')
+ if spec.satisfies('arch=x86_64:'):
+ fflags.append('-mcmodel=medium')
+ makefile_opt = FileFilter('Makefile.option')
+ makefile_opt.filter(
+ 'FC = .*$',
+ 'FC = {0}'.format(spec['mpi'].mpifc)
+ )
+ makefile_opt.filter(
+ 'FFLAGS = .*$',
+ 'FFLAGS = -O3 {0}'.format(' '.join(fflags))
+ )
+
+ def install(self, spec, prefix):
+ mkdir(prefix.bin)
+ copy(join_path(self.build_directory, 'seism3d3n'), prefix.bin)
+ install_src_dir = join_path(prefix.src, self.build_directory)
+ mkdirp(install_src_dir)
+ install_tree(self.build_directory, install_src_dir)
+ with working_dir(install_src_dir):
+ make('clean')
+ mkdir(prefix.doc)
+ copy('readme.txt', prefix.doc)
diff --git a/var/spack/repos/builtin/packages/ppopen-appl-fdm/gfortran_iargc.patch b/var/spack/repos/builtin/packages/ppopen-appl-fdm/gfortran_iargc.patch
new file mode 100755
index 0000000000..115a0f0688
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ppopen-appl-fdm/gfortran_iargc.patch
@@ -0,0 +1,13 @@
+diff --git a/tools/seismic_3D-tools/m_stdio.f90 b/tools/seismic_3D-tools/m_stdio.f90
+index bddb715..bc00f68 100644
+--- a/tools/seismic_3D-tools/m_stdio.f90
++++ b/tools/seismic_3D-tools/m_stdio.f90
+@@ -65,8 +65,6 @@ module stdio
+ real(PN), parameter :: DEG2RAD = PI/180._PN
+ real(PN), parameter :: RAD2DEG = 180.0_PN / PI
+
+- integer, external :: iargc
+-
+
+ interface readPrm
+ !
diff --git a/var/spack/repos/builtin/packages/ppopen-appl-fdm/package.py b/var/spack/repos/builtin/packages/ppopen-appl-fdm/package.py
new file mode 100755
index 0000000000..450ae99efb
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ppopen-appl-fdm/package.py
@@ -0,0 +1,137 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import os
+from spack import *
+
+
+class PpopenApplFdm(MakefilePackage):
+ """
+ ppOpen-APPL/FDM is a application software for the FDM simulation of
+ seismic wave propagation in elastic media in 2D and 3D.
+ The 2D application is prepared for a single-CPU (sequential) calculation
+ and the 3D application use MPI and OpenMP for parallel computing.
+ """
+
+ homepage = "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/"
+ url = "file://{0}/ppohFDM_0.3.1.tar.gz".format(os.getcwd())
+
+ version('0.3.1', sha256='5db7c28ef2df43c0ffa28e542d92320fe3c8cd7551aabe1de64647191ddf7d0b')
+
+ # remove unused variable definition
+ patch('unused.patch')
+ # remove iargc external definition
+ # iargc is intrinsic in gfortran
+ patch('gfortran_iargc.patch')
+
+ depends_on('ppopen-math-vis', type='link')
+ depends_on('mpi')
+
+ parallel = False
+
+ def edit(self, spec, prefix):
+ makefile_in = FileFilter('Makefile.in')
+ makefile_in.filter('PREFIX += .*$', 'PREFIX = {0}'.format(prefix))
+ makefile_in.filter(
+ 'LIBDIR = .*$',
+ 'LIBDIR = {0}'.format(prefix)
+ )
+ makefile_in.filter(
+ 'CC += .*$',
+ 'CC = {0}'.format(spec['mpi'].mpicc)
+ )
+ makefile_in.filter('COPTFLAGS += .*$', 'COPTFLAGS = -O3')
+ makefile_in.filter(
+ 'CXX += .*$',
+ 'CXX = {0}'.format(spec['mpi'].mpicxx)
+ )
+ makefile_in.filter('CXXOPTFLAGS = .*$', 'CXXOPTFLAGS = -O3')
+ makefile_in.filter(
+ 'FC += .*$',
+ 'FC = {0}'.format(spec['mpi'].mpifc)
+ )
+ makefile_in.filter('FOPTFLAGS += .*$', 'FOPTFLAGS = -O3')
+ makefile_in.filter(
+ 'F90 += .*$',
+ 'F90 = {0}'.format(spec['mpi'].mpifc)
+ )
+ makefile_in.filter('F90OPTFLAGS += .*$', 'F90OPTFLAGS = -O3')
+
+ makefile_opt = FileFilter(join_path(
+ 'src', 'seismic_2D', 'makefile.option')
+ )
+ makefile_opt.filter('FC = .*$', 'FC = {0}'.format(spack_fc))
+ makefile_opt.filter('FFLAGS = .*$', 'FFLAGS = -O3')
+
+ makefile = FileFilter(join_path(
+ 'src', 'seismic_3D', '1.ppohFDM-ppohVIS', 'Makefile')
+ )
+ makefile.filter('LIBS += .*$', 'LIBS = ')
+ makefile.filter(
+ 'FLDFLAGS += .*$',
+ 'FLDFLAGS = ' + spec['ppopen-math-vis'].libs.ld_flags
+ )
+
+ makefile_opt = FileFilter(join_path(
+ 'src', 'seismic_3D', '3.parallel', 'Makefile.option')
+ )
+ makefile_opt.filter('FC = .*$', 'FC = {0}'.format(spec['mpi'].mpifc))
+ makefile_opt.filter(
+ 'FFLAGS = .*$',
+ 'FFLAGS = -O3 {0}'.format(self.compiler.openmp_flag)
+ )
+
+ copy(
+ join_path('examples', 'seismic_3D-example', 'm_param.f90'),
+ join_path('src', 'seismic_3D', '1.ppohFDM-ppohVIS')
+ )
+ copy(
+ join_path('examples', 'seismic_3D-example', 'm_param.f90'),
+ join_path('src', 'seismic_3D', '3.parallel')
+ )
+
+ for makefile in find('tools', 'makefile', recursive=True):
+ fflags = ['-O3', '-I.']
+ m = FileFilter(makefile)
+ m.filter('^FC =.*$', 'FC = {0}'.format(spack_fc))
+ m.filter(
+ '^FFLAGS =.*$',
+ 'FFLAGS = {0}'.format(' '.join(fflags))
+ )
+
+ def build(self, spec, prefix):
+ make('seism2d', 'seism3d-ppohVIS', 'seism3d-parallel')
+ for d in ['seismic_2D-tools', 'seismic_3D-tools']:
+ with working_dir(join_path('tools', d)):
+ make('all')
+
+ def install(self, spec, prefix):
+ commands = [
+ join_path('src', 'seismic_2D', 'seism2d_psv'),
+ join_path('src', 'seismic_3D', '3.parallel', 'seism3d3n'),
+ join_path('src', 'seismic_3D', '1.ppohFDM-ppohVIS', 'seism3d3n'),
+ join_path('tools', 'seismic_2D-tools', 'pmxy2d'),
+ join_path('tools', 'seismic_2D-tools', 'rwav2d'),
+ join_path('tools', 'seismic_3D-tools', 'catsnap'),
+ join_path('tools', 'seismic_3D-tools', 'catwav'),
+ join_path('tools', 'seismic_3D-tools', 'ppmxy3d3'),
+ join_path('tools', 'seismic_3D-tools', 'rwav3d'),
+ ]
+ mkdir(prefix.bin)
+ for command in commands:
+ copy(command, prefix.bin)
+ install_tree('examples', prefix.examples)
+ install_tree('doc', prefix.doc)
+ install_tree('src', prefix.src)
+ copy('Makefile.in', prefix)
+ clean_dir = [
+ join_path(prefix.src, 'seismic_2D'),
+ join_path(prefix.src, 'seismic_3D', '1.ppohFDM-ppohVIS'),
+ join_path(prefix.src, 'seismic_3D', '3.parallel'),
+ ]
+ for d in clean_dir:
+ with working_dir(d):
+ make('clean')
+ force_remove(join_path(prefix, 'Makefile.in'))
diff --git a/var/spack/repos/builtin/packages/ppopen-appl-fdm/unused.patch b/var/spack/repos/builtin/packages/ppopen-appl-fdm/unused.patch
new file mode 100755
index 0000000000..4c6e67c65d
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ppopen-appl-fdm/unused.patch
@@ -0,0 +1,13 @@
+diff --git a/tools/seismic_2D-tools/rwav2d.f90 b/tools/seismic_2D-tools/rwav2d.f90
+index ec08ea8..0f9543c 100644
+--- a/tools/seismic_2D-tools/rwav2d.f90
++++ b/tools/seismic_2D-tools/rwav2d.f90
+@@ -41,7 +41,7 @@ program sort_seism2d_result
+
+ integer :: station_num
+ integer :: ns, isx, isz
+- integer :: i, k, ii, kk, j, IT
++ integer :: i, k, ii, kk, j
+ character(len=80) filename, filename2, tmp1
+ integer :: istx(5000,100), istz(5000,100), stnum(5000,100)
+ real(PN) :: ntime(5000,100), vxall(5000,100), vzall(5000,100)
diff --git a/var/spack/repos/builtin/packages/ppopen-math-vis/package.py b/var/spack/repos/builtin/packages/ppopen-math-vis/package.py
index ad2ff3a7c8..0082783ed5 100644
--- a/var/spack/repos/builtin/packages/ppopen-math-vis/package.py
+++ b/var/spack/repos/builtin/packages/ppopen-math-vis/package.py
@@ -43,3 +43,9 @@ class PpopenMathVis(MakefilePackage):
copy_tree('examples', join_path(prefix, 'examples'))
mkdir(join_path(prefix, 'doc'))
copy_tree('doc', join_path(prefix, 'doc'))
+
+ @property
+ def libs(self):
+ return find_libraries(
+ ['libfppohvisfdm3d', 'libppohvisfdm3d'],
+ root=self.prefix, shared=False, recursive=True)