diff options
| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2019-11-27 20:58:12 -0600 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2019-11-27 20:58:12 -0600 |
| commit | e974f48be0a1fe1f622d6f5300c60b74d409fa20 (patch) | |
| tree | 80d6960397f669a8ab03eca954995589ce70515a /var | |
| parent | 1b24dfb8bafe86fbff47a9751b199e2707e3c23e (diff) | |
| download | spack-e974f48be0a1fe1f622d6f5300c60b74d409fa20.tar.gz spack-e974f48be0a1fe1f622d6f5300c60b74d409fa20.tar.bz2 spack-e974f48be0a1fe1f622d6f5300c60b74d409fa20.tar.xz spack-e974f48be0a1fe1f622d6f5300c60b74d409fa20.zip | |
Build R without recommended packages (#12015)
The documentation states that Spack builds R without the recommmened
packages, with Spack handling the build of those packages to satisfy
dependencies. From the docs:
> Spack explicitly adds the --without-recommended-packages flag to
> prevent the installation of these packages. Due to the way Spack
> handles package activation (symlinking packages to the R installation
> directory), pre-existing recommended packages will cause conflicts for
> already-existing files. We could either not include these recommended
> packages in Spack and require them to be installed through
> --with-recommended-packages, or we could not install them with R and
> let users choose the version of the package they want to install. We
> chose the latter.
However, this is not what Spack is actually doing. The
`--without-recommended` configure option is not passed to R and
therefore those packages are built. This prevents R extension activation
from working as files in the recommended packages installed with R will
block linking of file from the respective `r-` packages.
This PR adds the `--without-recommended` flag to the configure options
of the R package. This will then have the Spack R build match what is
documented.
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r/package.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r/package.py b/var/spack/repos/builtin/packages/r/package.py index 3755fb594f..e9897ffa28 100644 --- a/var/spack/repos/builtin/packages/r/package.py +++ b/var/spack/repos/builtin/packages/r/package.py @@ -115,6 +115,7 @@ class R(AutotoolsPackage): '--enable-R-shlib', '--enable-BLAS-shlib', '--enable-R-framework=no', + '--without-recommended-packages', '--with-tcl-config={0}'.format(tcl_config_path), 'LDFLAGS=-L{0} -Wl,-rpath,{0}'.format(join_path(prefix, 'rlib', 'R', 'lib')), |