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| author | Jen Herting <jen@herting.cc> | 2022-10-06 04:27:37 -0400 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-10-06 10:27:37 +0200 |
| commit | 1f5729644be0ad6f4830464441447091bcf367cf (patch) | |
| tree | b23288be9545b090a489863a634b5f8645639d5d /var | |
| parent | aab5bcf05a2e60abbe346c41c73b0d4f25c3b2b4 (diff) | |
| download | spack-1f5729644be0ad6f4830464441447091bcf367cf.tar.gz spack-1f5729644be0ad6f4830464441447091bcf367cf.tar.bz2 spack-1f5729644be0ad6f4830464441447091bcf367cf.tar.xz spack-1f5729644be0ad6f4830464441447091bcf367cf.zip | |
New package: py-scanpy (#32565)
* [py-scanpy] New package
* [py-scanpy] Added types
* [py-scan] reworked dependencies
* [py-scanpy] flake8
* [py-scanpy] update import
* [py-scanpy] fixed minor issues
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-scanpy/package.py | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-scanpy/package.py b/var/spack/repos/builtin/packages/py-scanpy/package.py new file mode 100644 index 0000000000..fffc0e6f91 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-scanpy/package.py @@ -0,0 +1,40 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyScanpy(PythonPackage): + """Scanpy is a scalable toolkit for analyzing single-cell + gene expression data built jointly with anndata.""" + + homepage = "https://scanpy.readthedocs.io/en/stable/" + pypi = "scanpy/scanpy-1.9.1.tar.gz" + + version("1.9.1", sha256="00c9a83b649da7e0171c91e9a08cff632102faa760614fd05cd4d1dbba4eb541") + + depends_on("python@3.7:", type=("build", "run")) + depends_on("py-setuptools-scm", type="build") + depends_on("py-flit-core@3.4:3", type="build") + depends_on("py-importlib-metadata@0.7:", type=("build", "run"), when="^python@:3.7") + depends_on("py-tomli", type="build") + depends_on("py-packaging", type=("build", "run")) + depends_on("py-anndata@0.7.4:", type=("build", "run")) + depends_on("py-numpy@1.17.0:", type=("build", "run")) + depends_on("py-matplotlib@3.4:", type=("build", "run")) + depends_on("py-pandas@1.0:", type=("build", "run")) + depends_on("py-scipy@1.4:", type=("build", "run")) + depends_on("py-seaborn", type=("build", "run")) + depends_on("py-h5py@3:", type=("build", "run")) + depends_on("py-tqdm", type=("build", "run")) + depends_on("py-scikit-learn@0.22:", type=("build", "run")) + depends_on("py-statsmodels@0.10.0:", type=("build", "run")) + depends_on("py-patsy", type=("build", "run")) + depends_on("py-networkx@2.3:", type=("build", "run")) + depends_on("py-natsort", type=("build", "run")) + depends_on("py-joblib", type=("build", "run")) + depends_on("py-numba@0.41.0:", type=("build", "run")) + depends_on("py-umap-learn@0.3.10:", type=("build", "run")) + depends_on("py-session-info", type=("build", "run")) |