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| author | noguchi-k <55966120+noguchi-k@users.noreply.github.com> | 2020-03-02 10:58:27 +0900 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-03-01 19:58:27 -0600 |
| commit | 27de7a2726da78d3f1c692fadbd9d00258f003fb (patch) | |
| tree | 765cca8b60b34f035ba1dad5a990e6c19555a24f /var | |
| parent | ac4d0c3af7dedee2bdb73f45aa02f9685a4e2a64 (diff) | |
| download | spack-27de7a2726da78d3f1c692fadbd9d00258f003fb.tar.gz spack-27de7a2726da78d3f1c692fadbd9d00258f003fb.tar.bz2 spack-27de7a2726da78d3f1c692fadbd9d00258f003fb.tar.xz spack-27de7a2726da78d3f1c692fadbd9d00258f003fb.zip | |
lastz: cast from char to signed char (#15263)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/lastz/cast_signed_char.patch | 70 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/lastz/package.py | 3 |
2 files changed, 73 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/lastz/cast_signed_char.patch b/var/spack/repos/builtin/packages/lastz/cast_signed_char.patch new file mode 100644 index 0000000000..34fda31941 --- /dev/null +++ b/var/spack/repos/builtin/packages/lastz/cast_signed_char.patch @@ -0,0 +1,70 @@ +--- spack-src/src/sequences.c.org 2020-02-27 16:51:13.380985769 +0900 ++++ spack-src/src/sequences.c 2020-02-27 16:55:38.641465062 +0900 +@@ -5086,14 +5086,14 @@ + // find the next header + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + + if ((allowComments) && (ch == '#')) + { // comment, skip to end-of-line and go back and try again + while (ch != '\n') + { + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + continue; + } +@@ -5117,12 +5117,12 @@ + leadingWhite = 0; + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + while ((ch != '\n') && (isspace (ch))) + { + leadingWhite++; + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + + if (ch == '\n') +@@ -5137,7 +5137,7 @@ + break; // .. truncate the header) + *(s++) = ch; + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + *s = 0; + +@@ -5231,7 +5231,7 @@ + debugNamesFile_14; + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + + if (ch != '@') + suicidef ("internal error in find_next_fastq_coi\n" +@@ -5241,7 +5241,7 @@ + // read the header + + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + + s = buffer; + while ((ch != '\n') && (ch != '\r')) +@@ -5250,7 +5250,7 @@ + break; // .. truncate the header) + *(s++) = ch; + ch = seq_getc (_seq); +- if (ch == EOF) goto failure; ++ if ((signed char)ch == EOF) goto failure; + } + *s = 0; + diff --git a/var/spack/repos/builtin/packages/lastz/package.py b/var/spack/repos/builtin/packages/lastz/package.py index cbe4ee4e14..e590aec533 100644 --- a/var/spack/repos/builtin/packages/lastz/package.py +++ b/var/spack/repos/builtin/packages/lastz/package.py @@ -14,5 +14,8 @@ class Lastz(MakefilePackage): version('1.04.00', sha256='a4c2c7a77430387e96dbc9f5bdc75874334c672be90f5720956c0f211abf9f5a') + # cast from char to signed char + patch('cast_signed_char.patch') + def install(self, spec, prefix): make('install', 'LASTZ_INSTALL={0}'.format(prefix.bin)) |