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| author | Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com> | 2022-12-05 22:10:57 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-12-05 14:10:57 -0700 |
| commit | 56072172f5d90b13958cfe7b92f459226c481153 (patch) | |
| tree | 7b5a42724b575fe195d28499132b4d410907a90b /var | |
| parent | 64d957dece357255a8ac8f750545258db83da486 (diff) | |
| download | spack-56072172f5d90b13958cfe7b92f459226c481153.tar.gz spack-56072172f5d90b13958cfe7b92f459226c481153.tar.bz2 spack-56072172f5d90b13958cfe7b92f459226c481153.tar.xz spack-56072172f5d90b13958cfe7b92f459226c481153.zip | |
jellyfish: add variants for python and ruby bindings (#33832)
Co-authored-by: teachers-uk-net <stuart.morrison@kcl.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/jellyfish/package.py | 29 |
1 files changed, 22 insertions, 7 deletions
diff --git a/var/spack/repos/builtin/packages/jellyfish/package.py b/var/spack/repos/builtin/packages/jellyfish/package.py index 76fd9ba868..7ab4fe6b1f 100644 --- a/var/spack/repos/builtin/packages/jellyfish/package.py +++ b/var/spack/repos/builtin/packages/jellyfish/package.py @@ -7,21 +7,36 @@ from spack.package import * class Jellyfish(AutotoolsPackage): - """JELLYFISH is a tool for fast, memory-efficient counting of k-mers in - DNA.""" + """JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA.""" homepage = "https://www.cbcb.umd.edu/software/jellyfish/" - url = "https://github.com/gmarcais/Jellyfish/releases/download/v2.2.7/jellyfish-2.2.7.tar.gz" - list_url = "https://www.cbcb.umd.edu/software/jellyfish/" + url = "https://github.com/gmarcais/Jellyfish/releases/download/v2.3.0/jellyfish-2.3.0.tar.gz" + list_url = "https://github.com/gmarcais/Jellyfish/releases" - version("2.2.7", sha256="d80420b4924aa0119353a5b704f923863abc802e94efeb531593147c13e631a8") + version("2.3.0", sha256="e195b7cf7ba42a90e5e112c0ed27894cd7ac864476dc5fb45ab169f5b930ea5a") + version( + "2.2.7", + sha256="d80420b4924aa0119353a5b704f923863abc802e94efeb531593147c13e631a8", + preferred=True, + ) version( "1.1.11", sha256="496645d96b08ba35db1f856d857a159798c73cbc1eccb852ef1b253d1678c8e2", url="https://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz", ) - depends_on("perl", type=("build", "run")) - depends_on("python", type=("build", "run")) + depends_on("perl", when="@2.2.7:", type=("build", "run")) + variant("ruby", default=False, description="Enable ruby bindings") + # Info: python bindings exist, but are for python2 which is no longer supported in spack + + extends("ruby@:2.6", when="+ruby") patch("dna_codes.patch", when="@1.1.11") + + # v1.1.11 does not support language bindings + conflicts("+ruby", when="@1.1.11") + + def configure_args(self): + if "+ruby" in self.spec: + return ["--enable-ruby-binding"] + return [] |