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authorGlenn Johnson <glenn-johnson@uiowa.edu>2016-05-28 20:19:45 -0500
committerGlenn Johnson <glenn-johnson@uiowa.edu>2016-06-16 23:07:13 -0500
commit64acbbfcf03393eab99301f1e7843618c5547cf0 (patch)
tree653f5747a3fb25f1b21e4388f74626f58748f685 /var
parentf351e011d1f91372492651829b9dd82d81cd191d (diff)
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Clean up R package files
- remove unused imports - apply pep8 - reformat text strings
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/R/package.py44
1 files changed, 19 insertions, 25 deletions
diff --git a/var/spack/repos/builtin/packages/R/package.py b/var/spack/repos/builtin/packages/R/package.py
index 0177fe1a2b..727cd38461 100644
--- a/var/spack/repos/builtin/packages/R/package.py
+++ b/var/spack/repos/builtin/packages/R/package.py
@@ -22,28 +22,22 @@
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
-import functools
-import glob
-import inspect
import os
-import re
-from contextlib import closing
-import spack
-from llnl.util.lang import match_predicate
from spack import *
from spack.util.environment import *
class R(Package):
- """
- R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a
- wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series
- analysis, classification, clustering, etc. Please consult the R project homepage for further information.
- """
+ """R is 'GNU S', a freely available language and environment for
+ statistical computing and graphics which provides a wide variety of
+ statistical and graphical techniques: linear and nonlinear modelling,
+ statistical tests, time series analysis, classification, clustering, etc.
+ Please consult the R project homepage for further information."""
+
homepage = "https://www.r-project.org"
url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
-
+
extendable = True
version('3.2.3', '1ba3dac113efab69e706902810cc2970')
@@ -53,7 +47,8 @@ class R(Package):
version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4')
version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
- variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK')
+ variant('external-lapack', default=False,
+ description='Links to externally installed BLAS/LAPACK')
# Virtual dependencies
depends_on('blas', when='+external-lapack')
@@ -106,25 +101,24 @@ class R(Package):
r_libs_path = ':'.join(r_libs_path)
spack_env.set('R_LIBS', r_libs_path)
- # For run time environment set only the path for extension_spec and prepend it to R_LIBS
+ # For run time environment set only the path for extension_spec and
+ # prepend it to R_LIBS
if extension_spec.package.extends(self.spec):
- run_env.prepend_path('R_LIBS', os.path.join(extension_spec.prefix, self.r_lib_dir))
-
+ run_env.prepend_path('R_LIBS', os.path.join(
+ extension_spec.prefix, self.r_lib_dir))
def setup_dependent_package(self, module, ext_spec):
- """
- Called before R modules' install() methods.
-
- In most cases, extensions will only need to have one line::
-
- R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' % self.stage.archive_file)
- """
+ """Called before R modules' install() methods. In most cases,
+ extensions will only need to have one line:
+ R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' %
+ self.stage.archive_file)"""
# R extension builds can have a global R executable function
module.R = Executable(join_path(self.spec.prefix.bin, 'R'))
# Add variable for library directry
module.r_lib_dir = os.path.join(ext_spec.prefix, self.r_lib_dir)
- # Make the site packages directory for extensions, if it does not exist already.
+ # Make the site packages directory for extensions, if it does not exist
+ # already.
if ext_spec.package.is_extension:
mkdirp(module.r_lib_dir)