interproscan: new package at 5.36-75.0 (#12130)

1 files changed, 33 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/interproscan/package.py b/var/spack/repos/builtin/packages/interproscan/package.py
new file mode 100644
index 0000000000..85af451423
--- /dev/null
+++ b/var/spack/repos/builtin/packages/interproscan/package.py
@@ -0,0 +1,33 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Interproscan(Package):
+    """InterProScan is the software package that allows sequences
+       (protein and nucleic) to be scanned against InterPro's signatures.
+       Signatures are predictive models, provided by several different
+       databases, that make up the InterPro consortium."""
+
+    homepage = "https://www.ebi.ac.uk/interpro/interproscan.html"
+    url      = "https://github.com/ebi-pf-team/interproscan/archive/5.36-75.0.tar.gz"
+
+    version('5.36-75.0', sha256='383d7431e47c985056c856ceb6d4dcf7ed2559a4a3d5c210c01ce3975875addb')
+
+    depends_on('java@8.0:8.9', type=('build', 'run'))
+    depends_on('maven', type='build')
+    depends_on('perl@5:', type=('build', 'run'))
+    depends_on('python@3:', type=('build', 'run'))
+
+    def install(self, spec, prefix):
+        with working_dir('core'):
+            which('mvn')('clean', 'install')
+
+        install_tree('.', prefix)
+
+        # link the main shell script into the PATH
+        ips_bin_suffix = 'core/jms-implementation/target/interproscan-5-dist'
+        symlink(join_path(prefix, ips_bin_suffix), prefix.bin)