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authorGeorge Hartzell <hartzell@alerce.com>2016-07-25 14:17:44 -0400
committerGeorge Hartzell <hartzell@alerce.com>2016-08-02 11:10:12 -0400
commitbfcec696308ee8bfd226a54c17a7e15d49e2aed7 (patch)
tree4087433a49da0a251abb4abefed77d8cd6c6a0db /var
parent4373a2b629780a9c14d97110ed014a5620d4eca6 (diff)
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Add standard header, use spack helpers
Added the standard header (stolen from R). Touched up the install to use set_executable rather than doing it myself.
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/nextflow/package.py31
1 files changed, 26 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/nextflow/package.py b/var/spack/repos/builtin/packages/nextflow/package.py
index 92e11bbc9f..a91badd5ed 100644
--- a/var/spack/repos/builtin/packages/nextflow/package.py
+++ b/var/spack/repos/builtin/packages/nextflow/package.py
@@ -1,6 +1,29 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
from spack import *
-from glob import glob
-import os
+
class Nextflow(Package):
"""Data-driven computational pipelines"""
@@ -17,8 +40,6 @@ class Nextflow(Package):
pass
def install(self, spec, prefix):
- chmod = which('chmod')
-
mkdirp(prefix.bin)
install("nextflow", join_path(prefix.bin, "nextflow"))
- chmod('+x', join_path(prefix.bin, "nextflow"))
+ set_executable( join_path(prefix.bin, "nextflow"))