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| author | George Hartzell <hartzell@alerce.com> | 2017-03-28 19:34:41 -0700 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-03-28 21:34:41 -0500 |
| commit | d6cbae81c7c4dad025307c72141ce78d8d21b253 (patch) | |
| tree | f4833a8b572d41e6c37a11148656cd593ceb8bf9 /var | |
| parent | 70ec06949cfdafa7da33d21707614835f9720cc4 (diff) | |
| download | spack-d6cbae81c7c4dad025307c72141ce78d8d21b253.tar.gz spack-d6cbae81c7c4dad025307c72141ce78d8d21b253.tar.bz2 spack-d6cbae81c7c4dad025307c72141ce78d8d21b253.tar.xz spack-d6cbae81c7c4dad025307c72141ce78d8d21b253.zip | |
Update/samtools (#3595)
* Update samtools family to 1.4
* simple cleanup
* Make bzip depends_on for future versions too
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/bcftools/package.py | 2 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/htslib/package.py | 2 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/samtools/package.py | 1 |
3 files changed, 5 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bcftools/package.py b/var/spack/repos/builtin/packages/bcftools/package.py index a1b4a06dbb..b9954c328a 100644 --- a/var/spack/repos/builtin/packages/bcftools/package.py +++ b/var/spack/repos/builtin/packages/bcftools/package.py @@ -34,9 +34,11 @@ class Bcftools(Package): homepage = "http://samtools.github.io/bcftools/" url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2" + version('1.4', '50ccf0a073bd70e99cdb3c8be830416e') version('1.3.1', '575001e9fca37cab0c7a7287ad4b1cdb') depends_on('zlib') + depends_on('bzip2', when="@1.4:") def install(self, spec, prefix): make("prefix=%s" % prefix, "all") diff --git a/var/spack/repos/builtin/packages/htslib/package.py b/var/spack/repos/builtin/packages/htslib/package.py index 77829e71b9..20db1c918b 100644 --- a/var/spack/repos/builtin/packages/htslib/package.py +++ b/var/spack/repos/builtin/packages/htslib/package.py @@ -31,6 +31,8 @@ class Htslib(AutotoolsPackage): homepage = "https://github.com/samtools/htslib" url = "https://github.com/samtools/htslib/releases/download/1.3.1/htslib-1.3.1.tar.bz2" + version('1.4', '2a22ff382654c033c40e4ec3ea880050') version('1.3.1', '16d78f90b72f29971b042e8da8be6843') depends_on('zlib') + depends_on('bzip2', when="@1.4:") diff --git a/var/spack/repos/builtin/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py index b82a7e55d6..0793f8d9a1 100644 --- a/var/spack/repos/builtin/packages/samtools/package.py +++ b/var/spack/repos/builtin/packages/samtools/package.py @@ -33,6 +33,7 @@ class Samtools(Package): homepage = "www.htslib.org" url = "https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2" + version('1.4', '8cbd7d2a0ec16d834babcd6c6d85d691') version('1.3.1', 'a7471aa5a1eb7fc9cc4c6491d73c2d88') version('1.2', '988ec4c3058a6ceda36503eebecd4122') |