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author | lingnanyuan <1297162327@qq.com> | 2017-11-08 15:05:53 -0600 |
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committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-11-08 14:05:53 -0700 |
commit | dd3a6d7f18e784234e602a6aca876f9f70dfa997 (patch) | |
tree | ca613908322e74d577a0e9c9131fb063f21f305f /var | |
parent | 96f70606e84d58dedf9d5f8e1dd55557ebee3ceb (diff) | |
download | spack-dd3a6d7f18e784234e602a6aca876f9f70dfa997.tar.gz spack-dd3a6d7f18e784234e602a6aca876f9f70dfa997.tar.bz2 spack-dd3a6d7f18e784234e602a6aca876f9f70dfa997.tar.xz spack-dd3a6d7f18e784234e602a6aca876f9f70dfa997.zip |
r-ampliqueso: Create new package. (#6132)
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/r-ampliqueso/package.py | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-ampliqueso/package.py b/var/spack/repos/builtin/packages/r-ampliqueso/package.py new file mode 100644 index 0000000000..a703caf19e --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ampliqueso/package.py @@ -0,0 +1,51 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAmpliqueso(RPackage): + """The package provides tools and reports for the analysis of + amplicon sequencing panels, such as AmpliSeq.""" + + homepage = "https://www.bioconductor.org/packages/ampliQueso/" + url = "https://git.bioconductor.org/packages/ampliQueso" + + version('1.14.0', git='https://git.bioconductor.org/packages/ampliQueso', commit='9a4c26ec594171279aba8ab7fe59c4a2ea09b06b') + + depends_on('r@3.4.0:3.4.9', when='@1.14.0') + depends_on('r-samr', type=('build', 'run')) + depends_on('r-deseq', type=('build', 'run')) + depends_on('r-edger', type=('build', 'run')) + depends_on('r-xtable', type=('build', 'run')) + depends_on('r-statmod', type=('build', 'run')) + depends_on('r-genefilter', type=('build', 'run')) + depends_on('r-variantannotation', type=('build', 'run')) + depends_on('r-foreach', type=('build', 'run')) + depends_on('r-doparallel', type=('build', 'run')) + depends_on('r-gplots', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-rgl', type=('build', 'run')) + depends_on('r-knitr', type=('build', 'run')) + depends_on('r-rnaseqmap', type=('build', 'run')) |