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author | lingnanyuan <1297162327@qq.com> | 2017-11-08 15:05:17 -0600 |
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committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-11-08 14:05:17 -0700 |
commit | f73b409968f48f860783cbafca82aecb0d295fb1 (patch) | |
tree | 11ef53fcaf3ae02950669f2aae90ff3534247860 /var | |
parent | 2cba0d4d5f708ae1306932b573cc8641ca7098e4 (diff) | |
download | spack-f73b409968f48f860783cbafca82aecb0d295fb1.tar.gz spack-f73b409968f48f860783cbafca82aecb0d295fb1.tar.bz2 spack-f73b409968f48f860783cbafca82aecb0d295fb1.tar.xz spack-f73b409968f48f860783cbafca82aecb0d295fb1.zip |
r-anaquin: Create new package. (#6138)
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/r-anaquin/package.py | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-anaquin/package.py b/var/spack/repos/builtin/packages/r-anaquin/package.py new file mode 100644 index 0000000000..678084df09 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-anaquin/package.py @@ -0,0 +1,47 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAnaquin(RPackage): + """The project is intended to support the use of sequins + (synthetic sequencing spike-in controls) owned and made available + by the Garvan Institute of Medical Research. The goal is to + provide a standard open source library for quantitative analysis, + modelling and visualization of spike-in controls.""" + + homepage = "https://www.bioconductor.org/packages/Anaquin/" + url = "https://git.bioconductor.org/packages/Anaquin" + + version('1.2.0', git='https://git.bioconductor.org/packages/Anaquin', commit='584d1970cc9dc1d354f9a6d7c1306bd7e8567119') + + depends_on('r@3.4.0:3.4.9', when='@1.2.0') + depends_on('r-deseq2', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-locfit', type=('build', 'run')) + depends_on('r-qvalue', type=('build', 'run')) + depends_on('r-knitr', type=('build', 'run')) + depends_on('r-rocr', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) |