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authorAudrey Thoma <las_thoma15@iastate.edu>2017-07-20 13:16:32 -0500
committerAdam J. Stewart <ajstewart426@gmail.com>2017-07-20 13:16:32 -0500
commit5f0e1514acb5bb89728c53955968709ce7a7fed6 (patch)
treeb66cf6877a40cfb9fcf40ae194664f48a84502b8 /var
parent16fbd0fc41e6268d46ba1ccc0ab6e46a184af09b (diff)
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kentutils: new pacakge (#4831)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/kentutils/package.py52
1 files changed, 52 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/kentutils/package.py b/var/spack/repos/builtin/packages/kentutils/package.py
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+++ b/var/spack/repos/builtin/packages/kentutils/package.py
@@ -0,0 +1,52 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Kentutils(MakefilePackage):
+ """Jim Kent command line bioinformatic utilities"""
+
+ homepage = "https://github.com/ENCODE-DCC/kentUtils"
+ url = "https://github.com/ENCODE-DCC/kentUtils"
+
+ version('302.1', git='https://github.com/ENCODE-DCC/kentUtils.git', commit='d8376c5d52a161f2267346ed3dc94b5dce74c2f9')
+
+ depends_on('libpng')
+ depends_on('openssl')
+
+ # Actually depends on mysql, but mariadb works for now until mysql is
+ # available
+ depends_on('mariadb')
+
+ conflicts('%cce')
+ conflicts('%clang')
+ conflicts('%intel')
+ conflicts('%nag')
+ conflicts('%pgi')
+ conflicts('%xl')
+ conflicts('%xl_r')
+
+ def install(self, spec, prefix):
+ install_tree('bin', prefix.bin)