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| author | Eric <erimar77@users.noreply.github.com> | 2018-02-09 22:15:58 -0600 |
|---|---|---|
| committer | scheibelp <scheibel1@llnl.gov> | 2018-02-09 20:15:58 -0800 |
| commit | 912e6610569e50d9fc47b5a1fc51752b300dd83c (patch) | |
| tree | e447252383bc04b4e0ef6acefa612bfcef288754 /var | |
| parent | 74ffd8b6bece653a2c8f881ad557b1c8484707c0 (diff) | |
| download | spack-912e6610569e50d9fc47b5a1fc51752b300dd83c.tar.gz spack-912e6610569e50d9fc47b5a1fc51752b300dd83c.tar.bz2 spack-912e6610569e50d9fc47b5a1fc51752b300dd83c.tar.xz spack-912e6610569e50d9fc47b5a1fc51752b300dd83c.zip | |
new package: diffsplice (#7187)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/diffsplice/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/diffsplice/package.py b/var/spack/repos/builtin/packages/diffsplice/package.py new file mode 100644 index 0000000000..9e299ab892 --- /dev/null +++ b/var/spack/repos/builtin/packages/diffsplice/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Diffsplice(MakefilePackage): + """A novel tool for discovering and quantitating alternative splicing + variants present in an RNA-seq dataset, without relying on annotated + transcriptome or pre-determined splice pattern.""" + + homepage = "http://www.netlab.uky.edu/p/bioinfo/DiffSplice" + url = "http://protocols.netlab.uky.edu/~yin/download/diffsplice/diffsplice_0.1.1.tgz" + + version('0.1.2beta', 'a1df6e0b50968f2c229d5d7f97327336') + version('0.1.1', 'be90e6c072402d5aae0b4e2cbb8c10ac') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('diffsplice', prefix.bin) |