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| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2021-01-17 14:07:27 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-01-17 14:07:27 -0600 |
| commit | a54e4322e51523452fc566a13418b2d8709e0740 (patch) | |
| tree | e8b2a30ddcf7f6923df4380b0bb9c90879f5d82c /var | |
| parent | e316cde70677dbeba939c9d6dbd39fc5d1b8b705 (diff) | |
| download | spack-a54e4322e51523452fc566a13418b2d8709e0740.tar.gz spack-a54e4322e51523452fc566a13418b2d8709e0740.tar.bz2 spack-a54e4322e51523452fc566a13418b2d8709e0740.tar.xz spack-a54e4322e51523452fc566a13418b2d8709e0740.zip | |
add version 1.0-4 to r-ldheatmap (#21070)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-ldheatmap/package.py | 16 |
1 files changed, 13 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/r-ldheatmap/package.py b/var/spack/repos/builtin/packages/r-ldheatmap/package.py index 72c3b99308..4f6b2a554b 100644 --- a/var/spack/repos/builtin/packages/r-ldheatmap/package.py +++ b/var/spack/repos/builtin/packages/r-ldheatmap/package.py @@ -7,16 +7,26 @@ from spack import * class RLdheatmap(RPackage): - """LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between - SNPs""" + """Graphical Display of Pairwise Linkage Disequilibria Between SNPs + + Produces a graphical display, as a heat map, of measures of pairwise + linkage disequilibria between single nucleotide polymorphisms (SNPs). Users + may optionally include the physical locations or genetic map distances of + each SNP on the plot. The methods are described in Shin et al. (2006) + <doi:10.18637/jss.v016.c03>. Users should note that the imported package + 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', + 'GenomInfoDb' and 'IRanges' are all BioConductor packages + <https://bioconductor.org>.""" homepage = "https://sfustatgen.github.io/LDheatmap/" url = "https://cloud.r-project.org/src/contrib/LDheatmap_0.99-7.tar.gz" list_url = "https://cloud.r-project.org/src/contrib/Archive/LDheatmap" + version('1.0-4', sha256='07eb385f19e6a195e8e4d75be0b47c57744eabbf14045e527f0c27e1183ae5ca') version('0.99-7', sha256='aca54c839a424506d8be7153bf03b32026aeefe7ed38f534e8e19708e34212e4') depends_on('r@2.14.0:', type=('build', 'run')) + depends_on('r@4.0:', when='@1.0-4:', type=('build', 'run')) depends_on('r-genetics', type=('build', 'run')) - depends_on('r-rcpp', type=('build', 'run')) depends_on('r-snpstats', type=('build', 'run')) + depends_on('r-rcpp', type=('build', 'run')) |