blast2go: new package at 5.2.5 (#10725)

* blast2go: new package at 5.2.5

* blast2go: remove redundant url

1 files changed, 47 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/blast2go/package.py b/var/spack/repos/builtin/packages/blast2go/package.py
new file mode 100644
index 0000000000..e8abcddf0a
--- /dev/null
+++ b/var/spack/repos/builtin/packages/blast2go/package.py
@@ -0,0 +1,47 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Blast2go(Package):
+    """Blast2GO is a bioinformatics platform for high-quality functional
+       annotation and analysis of genomic datasets."""
+
+    homepage = "https://www.blast2go.com/"
+
+    version('5.2.5', sha256='c37aeda25f96ac0553b52da6b5af3167d50671ddbfb3b39bcb11afe5d0643891')
+
+    depends_on('bash', type='build')
+    depends_on('blast-plus', type='run')
+    depends_on('java', type='build')
+
+    def url_for_version(self, version):
+        fname = 'Blast2GO_unix_{0}.zip'.format(version.underscored)
+        return 'http://resources.biobam.com/software/blast2go/nico/%s' % fname
+
+    def install(self, spec, prefix):
+        # blast2go install script prompts for the following:
+        #
+        # continue? [o/c] => o
+        # installation prefix => prefix
+        # desktop icon [y/n] => n
+        # run blast2go? [y/n] => n
+
+        config_input_file = 'spack-config.in'
+
+        config_input_data = [
+            'o\n',
+            prefix.bin + '\n',
+            'n\n',
+            'n\n',
+        ]
+
+        with open(config_input_file, 'w') as f:
+            f.writelines(config_input_data)
+
+        with open(config_input_file, 'r') as f:
+            bash = which('bash')
+            bash('Blast2GO_unix_%s.sh' % self.version.underscored, input=f)