diff options
| author | pabloaledo <112545720+pabloaledo@users.noreply.github.com> | 2023-08-02 19:22:27 +0200 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-08-02 10:22:27 -0700 |
| commit | a7a5a994dc7d9307e21e10f842b75ce50065d712 (patch) | |
| tree | b77bc8e48e89ed6180a38b43cfb92892161b004b /var | |
| parent | 8a9a24ce1e96a4f0d7c24b79cc9988e9ac746eab (diff) | |
| download | spack-a7a5a994dc7d9307e21e10f842b75ce50065d712.tar.gz spack-a7a5a994dc7d9307e21e10f842b75ce50065d712.tar.bz2 spack-a7a5a994dc7d9307e21e10f842b75ce50065d712.tar.xz spack-a7a5a994dc7d9307e21e10f842b75ce50065d712.zip | |
bioconductor-dupradar, bioconductor-rsubread: add packages (#39206)
* bioconductor-dupradar, bioconductor-rsubread: add packages
* [@spackbot] updating style on behalf of pabloaledo
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/bioconductor-dupradar/package.py | 21 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/bioconductor-rsubread/package.py | 20 |
2 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bioconductor-dupradar/package.py b/var/spack/repos/builtin/packages/bioconductor-dupradar/package.py new file mode 100644 index 0000000000..6d7b84ca01 --- /dev/null +++ b/var/spack/repos/builtin/packages/bioconductor-dupradar/package.py @@ -0,0 +1,21 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class BioconductorDupradar(RPackage): + """Assessment of duplication rates in RNA-Seq datasets""" + + homepage = "https://bioconductor.org/packages/3.16/bioc/html/dupRadar.html" + url = "https://bioconductor.org/packages/release/bioc/src/contrib/dupRadar_1.30.0.tar.gz" + + bioc = "dupradar" + + version("1.30.0", sha256="a299d7a4578047dfc19237e34255b0f50f70ce41d29762ef9f5a7741ba35aa3d") + + depends_on("r-kernsmooth") + depends_on("subread") + depends_on("bioconductor-rsubread") diff --git a/var/spack/repos/builtin/packages/bioconductor-rsubread/package.py b/var/spack/repos/builtin/packages/bioconductor-rsubread/package.py new file mode 100644 index 0000000000..45428fbe73 --- /dev/null +++ b/var/spack/repos/builtin/packages/bioconductor-rsubread/package.py @@ -0,0 +1,20 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class BioconductorRsubread(RPackage): + """Mapping, quantification and variant analysis of sequencing data""" + + homepage = "https://bioconductor.org/packages/3.16/bioc/html/Rsubread.html" + url = "https://bioconductor.org/packages/release/bioc/src/contrib/Rsubread_2.14.2.tar.gz" + + bioc = "rsubread" + + depends_on("r-matrix") + depends_on("zlib") + + version("2.14.2", sha256="ac8be0fad0eb2743443e3a60a9a94eec78c746638aaccca70e7166d034dcebb5") |