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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-06-20 20:42:22 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-20 12:42:22 -0700 |
| commit | d0e843ce03d39b1fbfa2031fef670c2cb99d5a17 (patch) | |
| tree | e6170063dda7390668cc66ec446ac47eaa192630 /var | |
| parent | 37f6231f2a3994b4923fbcab3c350175bcb1c529 (diff) | |
| download | spack-d0e843ce03d39b1fbfa2031fef670c2cb99d5a17.tar.gz spack-d0e843ce03d39b1fbfa2031fef670c2cb99d5a17.tar.bz2 spack-d0e843ce03d39b1fbfa2031fef670c2cb99d5a17.tar.xz spack-d0e843ce03d39b1fbfa2031fef670c2cb99d5a17.zip | |
ncbi-rmblastn: patching to support building with %gcc@13: (#38382)
* ncbi-rmblastn: patching to support building with %gcc@13:
* ncbi-rmblastn: patching to build with %gcc@13:
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/ncbi-rmblastn/gcc13.patch | 10 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/ncbi-rmblastn/package.py | 3 |
2 files changed, 13 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/ncbi-rmblastn/gcc13.patch b/var/spack/repos/builtin/packages/ncbi-rmblastn/gcc13.patch new file mode 100644 index 0000000000..3eb0e7ccea --- /dev/null +++ b/var/spack/repos/builtin/packages/ncbi-rmblastn/gcc13.patch @@ -0,0 +1,10 @@ +--- c++/include/util/impl/compile_time_bits.hpp 2023-01-05 15:04:14.000000000 +0000 ++++ c++/include/util/impl/compile_time_bits.hpp.patched 2023-06-14 10:38:16.316603211 +0100 +@@ -39,6 +39,7 @@ + #include <limits> + #include <stdexcept> + #include <array> ++#include <cstdint> + + // forward declarations to avoid unnecessary includes + namespace ncbi diff --git a/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py b/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py index c18f556540..d4a1ca479f 100644 --- a/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py +++ b/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py @@ -43,6 +43,9 @@ class NcbiRmblastn(AutotoolsPackage): archive_sha256="e746ee480ade608052306fd21f015c8a323f27029f65399275216f9a4c882d59", when="@2.9.0", ) + + patch("gcc13.patch", level=0, when="@2.14.0:%gcc@13:") + depends_on("cpio", type="build") depends_on("boost") depends_on("lzo") |