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authorlingnanyuan <1297162327@qq.com>2017-10-27 01:27:19 -0500
committerMassimiliano Culpo <massimiliano.culpo@googlemail.com>2017-10-27 08:27:19 +0200
commit3bb4572e81df28c2926dca501bd36f2cd807dc1d (patch)
tree62fd6765f845577ac2769020ebb75c9f604ba96b /var
parent95ece343c41c7113176a41e8f2b7d2d5116881c5 (diff)
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r-pfam-db: Create new package. (#5965)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/r-pfam-db/package.py38
1 files changed, 38 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-pfam-db/package.py b/var/spack/repos/builtin/packages/r-pfam-db/package.py
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+++ b/var/spack/repos/builtin/packages/r-pfam-db/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RPfamDb(RPackage):
+ """A set of protein ID mappings for PFAM assembled using data from
+ public repositories."""
+
+ homepage = "https://www.bioconductor.org/packages/PFAM.db/"
+ url = "https://www.bioconductor.org/packages/release/data/annotation/src/contrib/PFAM.db_3.4.1.tar.gz"
+
+ version('3.4.1', '65ed35887ecc44f5ac9f9c8563e03f44')
+
+ depends_on('r@3.4.0:3.4.9', when='@3.4.1')
+ depends_on('r-annotationdbi', type=('build', 'run'))