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| author | George Young <A-N-Other@users.noreply.github.com> | 2024-02-04 12:06:45 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-02-04 06:06:45 -0600 |
| commit | 47c91c91632225db5d07034666b6d07e14b7b298 (patch) | |
| tree | 3643e26d3b46bbfd766611d458d905d610259baf /var | |
| parent | 6c57360eac460bc3a9eb8b51d493eeef5cdd82ad (diff) | |
| download | spack-47c91c91632225db5d07034666b6d07e14b7b298.tar.gz spack-47c91c91632225db5d07034666b6d07e14b7b298.tar.bz2 spack-47c91c91632225db5d07034666b6d07e14b7b298.tar.xz spack-47c91c91632225db5d07034666b6d07e14b7b298.zip | |
ldsc: new package @2.0.1 (#42430)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/ldsc/package.py | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/ldsc/package.py b/var/spack/repos/builtin/packages/ldsc/package.py new file mode 100644 index 0000000000..aa3defd512 --- /dev/null +++ b/var/spack/repos/builtin/packages/ldsc/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Ldsc(PythonPackage): + """ldsc is a command line tool for estimating heritability and genetic correlation from + GWAS summary statistics. ldsc also computes LD scores""" + + homepage = "http://github.com/bulik/ldsc" + pypi = "ldsc/ldsc-2.0.1.tar.gz" + + license("GPL-3.0-only", checked_by="A-N-Other") + + version("2.0.1", sha256="fe72f99da8a26414d82e47f2d2ee7cebbbab6c20d1b4ea51a0c38cc650c63556") + + depends_on("py-setuptools", type="build") + + depends_on("py-bitarray@2.6.0:", type=("build", "run")) + depends_on("py-pybedtools@0.9.0:", type=("build", "run")) + depends_on("py-scipy@1.9.2:", type=("build", "run")) + depends_on("py-numpy@1.23.3:", type=("build", "run")) + depends_on("py-pandas@1.5.0:", type=("build", "run")) |