diff options
| author | Justin Stanley <molecuul@users.noreply.github.com> | 2019-01-22 14:26:31 -0600 |
|---|---|---|
| committer | Levi Baber <baberlevi@gmail.com> | 2019-01-22 14:26:31 -0600 |
| commit | 9252f7f957decc46934b28e35393ba7be80f6e8c (patch) | |
| tree | 2fd79d3fee4b25d25ee4932063996eb16416e623 /var | |
| parent | 7baea6827864120ecae1aa05cefcac81a792f53b (diff) | |
| download | spack-9252f7f957decc46934b28e35393ba7be80f6e8c.tar.gz spack-9252f7f957decc46934b28e35393ba7be80f6e8c.tar.bz2 spack-9252f7f957decc46934b28e35393ba7be80f6e8c.tar.xz spack-9252f7f957decc46934b28e35393ba7be80f6e8c.zip | |
trinotate: remove perl-dbd-mysql, move runtime files to HOME (#9850)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/trinotate/package.py | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/trinotate/package.py b/var/spack/repos/builtin/packages/trinotate/package.py index df17f70841..d0a24d608f 100644 --- a/var/spack/repos/builtin/packages/trinotate/package.py +++ b/var/spack/repos/builtin/packages/trinotate/package.py @@ -26,7 +26,6 @@ class Trinotate(Package): depends_on('perl', type='run') depends_on('lighttpd', type='run') depends_on('perl-dbi', type='run') - depends_on('perl-dbd-mysql', type='run') depends_on('perl-cgi', type='run') depends_on('perl-dbd-sqlite', type='run') @@ -35,6 +34,14 @@ class Trinotate(Package): perlscripts = glob.glob('*.pl') filter_file('#!/usr/bin/perl', '#!/usr/bin/env perl', *perlscripts) + # trinotate web generates a config on run but puts it in a bad place + # this causes issues with permissions; we hack the source to keep it + # in the calling user's homedir + + filter_file('"$FindBin::RealBin/TrinotateWeb.conf/lighttpd.conf.port', + '$ENV{"HOME"} . "/.trinotate_lighttpd.conf.port', + 'run_TrinotateWebserver.pl', string=True) + def install(self, spec, prefix): # most of the perl modules have local deps, install the whole tree mkdirp(prefix.lib) |