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| author | Justin Stanley <molecuul@users.noreply.github.com> | 2019-01-22 14:25:10 -0600 |
|---|---|---|
| committer | Levi Baber <baberlevi@gmail.com> | 2019-01-22 14:25:10 -0600 |
| commit | bb942e1fc5a0e5c513e67419bf7befbd54e58e3e (patch) | |
| tree | fe18d2d8e0e39762ec55ee4819e2f519f4b2eeea /var | |
| parent | 4b7510ec38f4ea56b1aa7a13cd3e7cdaa210c8e2 (diff) | |
| download | spack-bb942e1fc5a0e5c513e67419bf7befbd54e58e3e.tar.gz spack-bb942e1fc5a0e5c513e67419bf7befbd54e58e3e.tar.bz2 spack-bb942e1fc5a0e5c513e67419bf7befbd54e58e3e.tar.xz spack-bb942e1fc5a0e5c513e67419bf7befbd54e58e3e.zip | |
entrezdirect: new package (#10374)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/entrezdirect/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/entrezdirect/package.py b/var/spack/repos/builtin/packages/entrezdirect/package.py new file mode 100644 index 0000000000..04aa202d54 --- /dev/null +++ b/var/spack/repos/builtin/packages/entrezdirect/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Entrezdirect(Package): + """Entrez Direct (EDirect) provides access to the NCBI's suite of + interconnected databases (publication, sequence, structure, + gene, variation, expression, etc.) from a UNIX terminal window.""" + + homepage = "https://www.ncbi.nlm.nih.gov/books/NBK179288/" + + version('10.7.20190114', sha256='4152749e6a3aac71a64e9367527428714ed16cf1fb6c7eff1298cca9ef144c0d') + + depends_on('perl', type='run') + depends_on('perl-html-parser', type='run') + depends_on('perl-libwww-perl', type='run') + depends_on('perl-lwp-protocol-https', type='run') + depends_on('perl-http-message', type='run') + depends_on('perl-xml-simple', type='run') + + def url_for_version(self, ver): + pfx = 'ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/' + return pfx + '{0}/edirect-{0}.tar.gz'.format(ver.dotted) + + def install(self, spec, prefix): + install_tree('.', prefix.bin) |