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| author | snehring <snehring@users.noreply.github.com> | 2022-01-04 18:44:04 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-01-04 17:44:04 -0700 |
| commit | efc5d0a3b49d193910b426198d24a3440483f71f (patch) | |
| tree | 31136d1875816a3c2d435e457f3b6253ea75b502 /var | |
| parent | 431473ea9b86e91f76d1bf5568f84c81ee7def09 (diff) | |
| download | spack-efc5d0a3b49d193910b426198d24a3440483f71f.tar.gz spack-efc5d0a3b49d193910b426198d24a3440483f71f.tar.bz2 spack-efc5d0a3b49d193910b426198d24a3440483f71f.tar.xz spack-efc5d0a3b49d193910b426198d24a3440483f71f.zip | |
snap-korf: version update + fix for compilers newer than gcc5 (#28243)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/snap-korf/package.py | 23 |
1 files changed, 18 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/snap-korf/package.py b/var/spack/repos/builtin/packages/snap-korf/package.py index 511c9895dc..5a53d63c26 100644 --- a/var/spack/repos/builtin/packages/snap-korf/package.py +++ b/var/spack/repos/builtin/packages/snap-korf/package.py @@ -10,20 +10,33 @@ class SnapKorf(MakefilePackage): homepage = "http://korflab.ucdavis.edu/software.html" url = "http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz" + git = "https://github.com/KorfLab/SNAP.git" + version('2021-11-04', commit='62ff3120fceccb03b5eea9d21afec3167dedfa94') version('2013-11-29', sha256='e2a236392d718376356fa743aa49a987aeacd660c6979cee67121e23aeffc66a') depends_on('perl', type=('build', 'run')) - depends_on('boost') - depends_on('sqlite') - depends_on('sparsehash') - conflicts('%gcc@5:', when='@2013-11-29') + def edit(self, spec, prefix): + if spec.satisfies('@2013-11-29%gcc@6:'): + rstr = '\\1 -Wno-tautological-compare -Wno-misleading-indentation' + filter_file('(-Werror)', rstr, 'Zoe/Makefile') + rstr = '\\1 -Wno-error=format-overflow -Wno-misleading-indentation' + filter_file('(-Werror)', rstr, 'Makefile') + + filter_file(r'(^const char \* zoeFunction;)', 'extern \\1', + 'Zoe/zoeTools.h') + filter_file(r'(^const char \* zoeConstructor;)', 'extern \\1', + 'Zoe/zoeTools.h') + filter_file(r'(^const char \* zoeMethod;)', 'extern \\1', + 'Zoe/zoeTools.h') def install(self, spec, prefix): mkdirp(prefix.bin) - progs = ['snap', 'fathom', 'forge', 'depend', 'exonpairs', 'hmm-info'] + progs = ['snap', 'fathom', 'forge'] + if spec.satisfies('@2013-11-29'): + progs = progs + ['depend', 'exonpairs', 'hmm-info'] for p in progs: install(p, prefix.bin) |