r-gtrellis: created new package (#6088)

1 files changed, 46 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-gtrellis/package.py b/var/spack/repos/builtin/packages/r-gtrellis/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RGtrellis(RPackage):
+    """Genome level Trellis graph visualizes genomic data conditioned by
+       genomic categories (e.g. chromosomes). For each genomic category,
+       multiple dimensional data which are represented as tracks describe
+       different features from different aspects. This package provides high
+       flexibility to arrange genomic categories and to add self-defined
+       graphics in the plot."""
+
+    homepage = "https://bioconductor.org/packages/gtrellis/"
+    url      = "https://git.bioconductor.org/packages/gtrellis"
+    list_url = homepage
+
+    version('1.8.0', git='https://git.bioconductor.org/packages/gtrellis', commit='f813b420a008c459f63a2a13e5e64c5507c4c472')
+
+    depends_on('r-iranges', type=('build', 'run'))
+    depends_on('r-genomicranges', type=('build', 'run'))
+    depends_on('r-circlize', type=('build', 'run'))
+    depends_on('r-getoptlong', type=('build', 'run'))
+    depends_on('r@3.4.0:3.4.9', when='@1.8.0')