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authorTiziano Müller <tiziano.mueller@chem.uzh.ch>2021-08-09 13:46:15 +0200
committerGitHub <noreply@github.com>2021-08-09 13:46:15 +0200
commitfa715c9892073fcfae5369ec740dd9d95b2ac20f (patch)
treecc02106e4454857896b20702aadee625b3193e63 /var
parent80473283f3baa3e03021ccbad995892118b757c2 (diff)
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cp2k: update elpa and sirius dependencies, fix build with mpich and gcc@10 (#24376)
* cp2k: fix build with GCC-10+ and MPICH * cp2k: update SIRIUS and ELPA dependencies * elpa: add version 2021.05.001, add ROCm support, include SVE flags
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/cp2k/package.py11
-rw-r--r--var/spack/repos/builtin/packages/elpa/package.py69
2 files changed, 52 insertions, 28 deletions
diff --git a/var/spack/repos/builtin/packages/cp2k/package.py b/var/spack/repos/builtin/packages/cp2k/package.py
index ee18aa026d..2d086d22a3 100644
--- a/var/spack/repos/builtin/packages/cp2k/package.py
+++ b/var/spack/repos/builtin/packages/cp2k/package.py
@@ -120,7 +120,8 @@ class Cp2k(MakefilePackage, CudaPackage):
depends_on('elpa~openmp', when='~openmp')
depends_on('elpa@2011.12:2016.13', when='@:5.999')
depends_on('elpa@2011.12:2017.11', when='@6.0:6.999')
- depends_on('elpa@2018.05:', when='@7.0:')
+ depends_on('elpa@2018.05:2020.11.001', when='@7.0:8.2')
+ depends_on('elpa@2021.05:', when='@8.3:')
with when('+plumed'):
depends_on('plumed+shared')
@@ -138,11 +139,12 @@ class Cp2k(MakefilePackage, CudaPackage):
# like ELPA, SCALAPACK are independent and Spack will ensure that
# a consistent/compatible combination is pulled into the dependency graph.
with when('+sirius'):
- depends_on('sirius+fortran+vdwxc+shared')
+ depends_on('sirius+fortran+shared')
depends_on('sirius+openmp', when='+openmp')
depends_on('sirius~openmp', when='~openmp')
depends_on('sirius@:6.999', when='@:7.999')
- depends_on('sirius@7:', when='@8:')
+ depends_on('sirius@7:7.0.999', when='@8:8.2')
+ depends_on('sirius@7.2:', when='@8.3:')
conflicts('~mpi')
# sirius support was introduced in 7+
conflicts('@:6.999')
@@ -299,6 +301,9 @@ class Cp2k(MakefilePackage, CudaPackage):
fcflags += ['-qpreprocess', '-qstrict', '-q64']
ldflags += ['-Wl,--allow-multiple-definition']
+ if '%gcc@10: +mpi' in spec and spec['mpi'].name in ['mpich', 'cray-mpich']:
+ fcflags += ['-fallow-argument-mismatch'] # https://github.com/pmodels/mpich/issues/4300
+
if '+openmp' in spec:
cflags.append(self.compiler.openmp_flag)
cxxflags.append(self.compiler.openmp_flag)
diff --git a/var/spack/repos/builtin/packages/elpa/package.py b/var/spack/repos/builtin/packages/elpa/package.py
index 6ab1dab6fa..6ab9ba299a 100644
--- a/var/spack/repos/builtin/packages/elpa/package.py
+++ b/var/spack/repos/builtin/packages/elpa/package.py
@@ -8,12 +8,13 @@ import os
from spack import *
-class Elpa(AutotoolsPackage, CudaPackage):
+class Elpa(AutotoolsPackage, CudaPackage, ROCmPackage):
"""Eigenvalue solvers for Petaflop-Applications (ELPA)"""
homepage = 'https://elpa.mpcdf.mpg.de/'
- url = 'https://elpa.mpcdf.mpg.de/elpa-2015.11.001.tar.gz'
+ url = 'https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2015.11.001/elpa-2015.11.001.tar.gz'
+ version('2021.05.001', sha256='a4f1a4e3964f2473a5f8177f2091a9da5c6b5ef9280b8272dfefcbc3aad44d41')
version('2020.05.001', sha256='66ff1cf332ce1c82075dc7b5587ae72511d2bcb3a45322c94af6b01996439ce5')
version('2019.11.001', sha256='10374a8f042e23c7e1094230f7e2993b6f3580908a213dbdf089792d05aff357')
version('2019.05.002', sha256='d2eab5e5d74f53601220b00d18185670da8c00c13e1c1559ecfb0cd7cb2c4e8d')
@@ -28,23 +29,31 @@ class Elpa(AutotoolsPackage, CudaPackage):
version('2016.05.003', sha256='c8da50c987351514e61491e14390cdea4bdbf5b09045261991876ed5b433fca4')
version('2015.11.001', sha256='c0761a92a31c08a4009c9688c85fc3fc8fde9b6ce05e514c3e1587cf045e9eba')
- variant('openmp', default=False, description='Activates OpenMP support')
+ variant('openmp', default=True, description='Activates OpenMP support')
+ variant('mpi', default=True, description='Activates MPI support')
- depends_on('mpi')
depends_on('blas')
depends_on('lapack')
- depends_on('scalapack')
+ depends_on('mpi', when='+mpi')
+ depends_on('scalapack', when='+mpi')
+ depends_on('rocblas', when='+rocm')
depends_on('libtool', type='build')
depends_on('python@:2', type='build', when='@:2020.05.001')
depends_on('python@3:', type='build', when='@2020.11.001:')
patch('python_shebang.patch', when='@:2020.05.001')
+ # fails to build due to broken type-bound procedures in OMP parallel regions
+ conflicts('+openmp', when='@2021.05.001: %gcc@:7.999',
+ msg='ELPA-2021.05.001+ requires GCC-8+ for OpenMP support')
+ conflicts('+rocm', when='@:2020.99',
+ msg='ROCm support was introduced in ELPA 2021.05.001')
+ conflicts('+mpi', when='+rocm',
+ msg='ROCm support and MPI are not yet compatible')
+
def url_for_version(self, version):
- t = 'https://elpa.mpcdf.mpg.de/html/Releases/{0}/elpa-{0}.tar.gz'
- if version < Version('2016.05.003'):
- t = 'https://elpa.mpcdf.mpg.de/elpa-{0}.tar.gz'
- return t.format(str(version))
+ return ('https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/{0}/elpa-{0}.tar.gz'
+ .format(str(version)))
# override default implementation which returns static lib
@property
@@ -73,8 +82,11 @@ class Elpa(AutotoolsPackage, CudaPackage):
spec = self.spec
options = []
+ options += self.with_or_without('mpi')
+
# TODO: --disable-sse-assembly, --enable-sparc64, --enable-neon-arch64
- simd_features = ['vsx', 'sse', 'avx', 'avx2', 'avx512']
+ simd_features = ['vsx', 'sse', 'avx', 'avx2', 'avx512',
+ 'sve128', 'sve256', 'sve512']
for feature in simd_features:
msg = '--enable-{0}' if feature in spec.target else '--disable-{0}'
@@ -111,34 +123,41 @@ class Elpa(AutotoolsPackage, CudaPackage):
'CFLAGS=-O3'
])
+ cuda_flag = 'nvidia-gpu' if '@2021.05.001:' in self.spec else 'gpu'
if '+cuda' in spec:
prefix = spec['cuda'].prefix
- options.append('--enable-gpu')
+ options.append('--enable-{0}'.format(cuda_flag))
options.append('--with-cuda-path={0}'.format(prefix))
options.append('--with-cuda-sdk-path={0}'.format(prefix))
cuda_arch = spec.variants['cuda_arch'].value[0]
if cuda_arch != 'none':
- options.append('--with-GPU-compute-capability=sm_{0}'.
- format(cuda_arch))
+ options.append('--with-{0}-compute-capability=sm_{1}'.
+ format(cuda_flag.upper(), cuda_arch))
else:
- options.append('--disable-gpu')
+ options.append('--disable-{0}'.format(cuda_flag))
- if '+openmp' in spec:
- options.append('--enable-openmp')
- else:
- options.append('--disable-openmp')
+ if '+rocm' in spec:
+ options.append('--enable-amd-gpu')
+ options.append('CXX={0}'.format(self.spec['hip'].hipcc))
+ elif '@2021.05.001:' in self.spec:
+ options.append('--disable-amd-gpu')
+
+ options += self.enable_or_disable('openmp')
- options.extend([
- 'CC={0}'.format(spec['mpi'].mpicc),
- 'FC={0}'.format(spec['mpi'].mpifc),
- 'CXX={0}'.format(spec['mpi'].mpicxx),
+ options += [
'LDFLAGS={0}'.format(spec['lapack'].libs.search_flags),
'LIBS={0} {1}'.format(
- spec['lapack'].libs.link_flags, spec['blas'].libs.link_flags),
- 'SCALAPACK_LDFLAGS={0}'.format(spec['scalapack'].libs.joined())
- ])
+ spec['lapack'].libs.link_flags, spec['blas'].libs.link_flags)]
+
+ if '+mpi' in self.spec:
+ options += [
+ 'CC={0}'.format(spec['mpi'].mpicc),
+ 'CXX={0}'.format(spec['mpi'].mpicxx),
+ 'FC={0}'.format(spec['mpi'].mpifc),
+ 'SCALAPACK_LDFLAGS={0}'.format(spec['scalapack'].libs.joined())
+ ]
options.append('--disable-silent-rules')