New package: h5part (#3821)

2 files changed, 72 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/h5part/mpiio.patch b/var/spack/repos/builtin/packages/h5part/mpiio.patch
new file mode 100644
index 0000000000..152cfec349
--- /dev/null
+++ b/var/spack/repos/builtin/packages/h5part/mpiio.patch
@@ -0,0 +1,26 @@
+https://github.com/quinoacomputing/H5Part/commit/b8b106c368c3400b4df3d38e97ae2943d37d3c7d.patch
+
+From b8b106c368c3400b4df3d38e97ae2943d37d3c7d Mon Sep 17 00:00:00 2001
+From: Jozsef Bakosi <jbakosi@lanl.gov>
+Date: Thu, 28 Jul 2016 08:37:24 -0600
+Subject: [PATCH] Replace H5Pset_fapl_mpiposix with H5Pset_fapl_mpio
+
+Based on the advice at
+http://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2014/msg00188.html.
+---
+ src/H5Part.c | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/H5Part.c b/src/H5Part.c
+index 433a574..8a1b893 100644
+--- a/src/H5Part.c
++++ b/src/H5Part.c
+@@ -246,7 +246,7 @@ _H5Part_open_file (
+ 		/* select the HDF5 VFD */
+ 		if (flags & H5PART_VFD_MPIPOSIX) {
+ 			_H5Part_print_info ( "Selecting MPI-POSIX VFD" );
+-			if (H5Pset_fapl_mpiposix ( f->access_prop, comm, 0 ) < 0) {
++			if (H5Pset_fapl_mpio ( f->access_prop, comm, 0 ) < 0) {
+ 				HANDLE_H5P_SET_FAPL_ERR;
+ 				goto error_cleanup;
+ 			}
diff --git a/var/spack/repos/builtin/packages/h5part/package.py b/var/spack/repos/builtin/packages/h5part/package.py
new file mode 100644
index 0000000000..3ff407accd
--- /dev/null
+++ b/var/spack/repos/builtin/packages/h5part/package.py
@@ -0,0 +1,46 @@
+##############################################################################
+# Copyright (c) 2017, Los Alamos National Security, LLC
+# Produced at the Los Alamos National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class H5part(AutotoolsPackage):
+    """Portable High Performance Parallel Data Interface to HDF5"""
+
+    homepage = "http://vis.lbl.gov/Research/H5Part/"
+    url      = "https://codeforge.lbl.gov/frs/download.php/latestfile/18/H5Part-1.6.6.tar.gz"
+
+    version('1.6.6', '327c63d198e38a12565b74cffdf1f9d7')
+    patch('mpiio.patch')
+
+    depends_on('mpi')
+    depends_on('hdf5+mpi')
+
+    def configure_args(self):
+        args = ['--enable-parallel',
+                '--with-hdf5=%s' % self.spec['hdf5'].prefix,
+                'CC=mpicc',
+                'CXX=mpicxx']
+        return args