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author | Justin S <3630356+codeandkey@users.noreply.github.com> | 2019-10-29 18:08:51 -0500 |
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committer | Adam J. Stewart <ajstewart426@gmail.com> | 2019-10-29 18:08:51 -0500 |
commit | d76ec7b2da8028bf9215e184450352e83e6aa88a (patch) | |
tree | 50425e8613075c39157eba8161cb11d47f51953e /var | |
parent | c99d367a11b14fc47da7bb607f532156923ad075 (diff) | |
download | spack-d76ec7b2da8028bf9215e184450352e83e6aa88a.tar.gz spack-d76ec7b2da8028bf9215e184450352e83e6aa88a.tar.bz2 spack-d76ec7b2da8028bf9215e184450352e83e6aa88a.tar.xz spack-d76ec7b2da8028bf9215e184450352e83e6aa88a.zip |
r-dada2: new package at 1.14 (#13492)
* r-dada2: new package at 1.14
* r-dada2: add gmake dependency
* Update var/spack/repos/builtin/packages/r-dada2/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/r-dada2/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-dada2/package.py b/var/spack/repos/builtin/packages/r-dada2/package.py new file mode 100644 index 0000000000..41354055fe --- /dev/null +++ b/var/spack/repos/builtin/packages/r-dada2/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RDada2(RPackage): + """Accurate sample inference from amplicon data with single nucleotide + resolution""" + + homepage = "http://benjjneb.github.io/dada2/" + url = "https://github.com/benjjneb/dada2/archive/v1.14.tar.gz" + + version('1.14', sha256='19980b9d7b0a0e80e86010357cae11d1fc07c2d02067c4445169143cf1f99906') + + depends_on('r@3.4:', type=('build', 'run')) + depends_on('r-rcpp@0.12.0:', type=('build', 'run')) + depends_on('r-biostrings@2.42.1:', type=('build', 'run')) + depends_on('r-ggplot2@2.1.0:', type=('build', 'run')) + depends_on('r-reshape2@1.4.1:', type=('build', 'run')) + depends_on('r-shortread@1.32.0:', type=('build', 'run')) + depends_on('r-rcppparallel@4.3.0:', type=('build', 'run')) + depends_on('r-iranges@2.6.0:', type=('build', 'run')) + depends_on('r-xvector@0.16.0:', type=('build', 'run')) + depends_on('r-biocgenerics@0.22.0:', type=('build', 'run')) + + depends_on('gmake', type='build') |