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author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-07-13 07:44:44 -0500 |
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committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-07-13 07:44:44 -0500 |
commit | 1ecb389dcbd768db85619adbf849139fbe7e191c (patch) | |
tree | 56c9a01b0a6c826e8baa2977c48e58b30431c707 /var | |
parent | 5ac2020c988d5c2b2f74328d141c872df656136b (diff) | |
download | spack-1ecb389dcbd768db85619adbf849139fbe7e191c.tar.gz spack-1ecb389dcbd768db85619adbf849139fbe7e191c.tar.bz2 spack-1ecb389dcbd768db85619adbf849139fbe7e191c.tar.xz spack-1ecb389dcbd768db85619adbf849139fbe7e191c.zip |
mitofates: new package and dependency libsvm (#4741)
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/libsvm/package.py | 43 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/mitofates/package.py | 41 |
2 files changed, 84 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/libsvm/package.py b/var/spack/repos/builtin/packages/libsvm/package.py new file mode 100644 index 0000000000..3a52d4f3ef --- /dev/null +++ b/var/spack/repos/builtin/packages/libsvm/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Libsvm(MakefilePackage): + """Libsvm is a simple, easy-to-use, and efficient software for SVM + classification and regression.""" + + homepage = "https://www.csie.ntu.edu.tw/~cjlin/libsvm/" + url = "https://github.com/cjlin1/libsvm/archive/v322.tar.gz" + + version('322', 'd9617d29efad013573f63ca9a517f490') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + mkdirp(prefix.lib) + install('svm-predict', prefix.bin) + install('svm-scale', prefix.bin) + install('svm-train', prefix.bin) + install('svm.o', prefix.lib) diff --git a/var/spack/repos/builtin/packages/mitofates/package.py b/var/spack/repos/builtin/packages/mitofates/package.py new file mode 100644 index 0000000000..0ca4ae58f2 --- /dev/null +++ b/var/spack/repos/builtin/packages/mitofates/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Mitofates(Package): + """MitoFates predicts mitochondrial presequence, a cleavable localization + signal located in N-terminal, and its cleaved position.""" + + homepage = "http://mitf.cbrc.jp/MitoFates/cgi-bin/top.cgi" + url = "http://mitf.cbrc.jp/MitoFates/program/MitoFates_1.2.tar.gz" + + version('1.2', 'aaac42a8e8c7318a4abde9df3a4b72d1') + + depends_on('libsvm') + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) + install('MitoFates.pl', prefix) |