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| author | Luke Diorio-Toth <ldioriototh@gmail.com> | 2022-06-30 12:58:12 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-06-30 10:58:12 -0700 |
| commit | 60c533b80be9c25d66a8409cb906417ab43a8085 (patch) | |
| tree | 97c78364e4665358fa2cdd64adb8f993c5877ef5 /var | |
| parent | 60d94f2782aa7944a5e69619355676ccc8225ef4 (diff) | |
| download | spack-60c533b80be9c25d66a8409cb906417ab43a8085.tar.gz spack-60c533b80be9c25d66a8409cb906417ab43a8085.tar.bz2 spack-60c533b80be9c25d66a8409cb906417ab43a8085.tar.xz spack-60c533b80be9c25d66a8409cb906417ab43a8085.zip | |
py-cmseq: new package (#31375)
* py-cmseq: new package
* py-cmseq: fixed copyright year
* py-cmseq: changed download to pi, added deps
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-cmseq/package.py | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-cmseq/package.py b/var/spack/repos/builtin/packages/py-cmseq/package.py new file mode 100644 index 0000000000..c1490969d6 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-cmseq/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class PyCmseq(PythonPackage): + """CMSeq is a set of commands to provide an interface + to .bam files for coverage and sequence consensus.""" + + homepage = "https://github.com/SegataLab/cmseq" + pypi = "CMSeq/CMSeq-1.0.4.tar.gz" + + version('1.0.4', sha256='93038a6dba826e29a66df3ec8ab2b3e3872acac7af9df245e4a5a624584aca5c') + + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-scipy', type=('build', 'run')) + depends_on('py-bcbio-gff', type=('build', 'run')) + depends_on('samtools@1.2:', type=('build', 'run')) + depends_on('py-pysam', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-biopython@:1.76', type=('build', 'run')) + depends_on('py-setuptools@:57', type=('build')) |