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| author | Justin S <3630356+codeandkey@users.noreply.github.com> | 2020-05-12 03:09:01 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-05-12 10:09:01 +0200 |
| commit | 80e7a615974a02a16ebe68f42c32e49af4e2a4be (patch) | |
| tree | e31002cc66b2c92f672e20b76896e7de0e29dc16 /var | |
| parent | 269bcfe1c8fa404dc5cb0ab3c94459edc16fd72a (diff) | |
| download | spack-80e7a615974a02a16ebe68f42c32e49af4e2a4be.tar.gz spack-80e7a615974a02a16ebe68f42c32e49af4e2a4be.tar.bz2 spack-80e7a615974a02a16ebe68f42c32e49af4e2a4be.tar.xz spack-80e7a615974a02a16ebe68f42c32e49af4e2a4be.zip | |
prokka: new package at v1.14.6 (#16282)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/prokka/package.py | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/prokka/package.py b/var/spack/repos/builtin/packages/prokka/package.py new file mode 100644 index 0000000000..eedb5fde08 --- /dev/null +++ b/var/spack/repos/builtin/packages/prokka/package.py @@ -0,0 +1,31 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Prokka(Package): + """Prokka is a software tool to annotate bacterial, archaeal and viral + genomes quickly and produce standards-compliant output files.""" + + homepage = "https://github.com/tseemann/prokka" + url = "https://github.com/tseemann/prokka/archive/v1.14.5.tar.gz" + + version('1.14.6', sha256='f730b5400ea9e507bfe6c5f3d22ce61960a897195c11571c2e1308ce2533faf8') + + depends_on('perl', type='run') + depends_on('perl-bioperl', type='run') + depends_on('perl-xml-simple', type='run') + depends_on('perl-bio-searchio-hmmer', type='run') + depends_on('hmmer', type='run') + depends_on('blast-plus', type='run') + depends_on('prodigal', type='run') + depends_on('tbl2asn', type='run') + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) + install_tree('binaries', prefix.binaries) + install_tree('db', prefix.db) + install_tree('doc', prefix.doc) |